Variant report

Variant	rs886704
Chromosome Location	chr7:124422266-124422267
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:124405136..124407728-chr7:124419375..124422347,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170775	Chromatin interaction

Extended variants
information (count: 314 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:312)

rs_ID	r²[population]
rs10081226	0.84[EUR][1000 genomes]
rs10081265	0.85[EUR][1000 genomes]
rs10081266	0.83[EUR][1000 genomes]
rs10081290	0.84[CEU][hapmap];0.85[EUR][1000 genomes]
rs10081375	0.85[EUR][1000 genomes]
rs10085793	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10085867	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10085888	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1011721	0.84[EUR][1000 genomes]
rs1011722	0.85[EUR][1000 genomes]
rs1011723	0.85[EUR][1000 genomes]
rs10156168	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10223980	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10224946	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10225140	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10227119	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs10227821	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10228376	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10228682	0.92[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.91[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10229152	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10231355	0.85[EUR][1000 genomes]
rs10231491	0.83[EUR][1000 genomes]
rs10231818	0.85[EUR][1000 genomes]
rs10233306	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10233589	0.92[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10234592	0.84[CEU][hapmap]
rs10236403	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10236782	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10237080	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10239507	0.84[CEU][hapmap];0.85[EUR][1000 genomes]
rs10243479	0.81[EUR][1000 genomes]
rs10243490	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10243736	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10243992	0.83[EUR][1000 genomes]
rs10245872	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10246553	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10247349	0.88[CEU][hapmap]
rs10250202	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10250911	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10252039	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10252072	0.84[EUR][1000 genomes]
rs10252443	0.80[CEU][hapmap];0.95[TSI][hapmap]
rs10255209	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10255638	0.84[CEU][hapmap];0.98[TSI][hapmap];0.85[EUR][1000 genomes]
rs10256218	0.84[CEU][hapmap]
rs10257255	0.92[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10257712	0.81[CEU][hapmap];0.85[EUR][1000 genomes]
rs10260039	0.84[CEU][hapmap]
rs10260227	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10260710	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10261610	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10263573	0.92[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10264210	0.84[CEU][hapmap]
rs10264288	0.85[ASW][hapmap];0.84[CEU][hapmap];0.83[LWK][hapmap];0.87[MEX][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes]
rs10264766	0.83[EUR][1000 genomes]
rs10269011	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10270784	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10271687	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10272583	0.87[CEU][hapmap];0.86[CHB][hapmap];0.97[CHD][hapmap];0.85[JPT][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10272889	0.85[EUR][1000 genomes]
rs10275346	0.84[CEU][hapmap];0.98[TSI][hapmap]
rs10276834	0.84[CEU][hapmap]
rs10279816	0.84[EUR][1000 genomes]
rs10280341	0.85[EUR][1000 genomes]
rs10954045	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10954048	0.92[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10954049	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10954050	0.85[EUR][1000 genomes]
rs10954051	0.85[EUR][1000 genomes]
rs10954056	0.87[CEU][hapmap];0.85[EUR][1000 genomes]
rs11761669	0.84[CEU][hapmap];0.98[TSI][hapmap]
rs11769711	0.85[EUR][1000 genomes]
rs11975788	0.92[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11978628	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11978656	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11979724	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11980178	0.84[CEU][hapmap]
rs11980925	0.92[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11981797	0.85[EUR][1000 genomes]
rs11983251	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12111658	0.85[EUR][1000 genomes]
rs12111660	0.85[EUR][1000 genomes]
rs12112909	0.84[CEU][hapmap];0.83[MEX][hapmap];0.98[TSI][hapmap];0.85[EUR][1000 genomes]
rs12113765	0.84[CEU][hapmap]
rs12154816	0.91[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12155120	0.92[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12530981	0.91[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12533560	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12535807	0.84[CEU][hapmap];0.98[TSI][hapmap]
rs12536017	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12536146	0.85[EUR][1000 genomes]
rs12536575	0.92[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12537161	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12537431	0.83[CEU][hapmap]
rs12538083	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12538333	0.84[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.90[JPT][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12538641	0.84[CEU][hapmap];0.85[EUR][1000 genomes]
rs12539580	0.84[CEU][hapmap];0.98[TSI][hapmap]
rs12540168	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12540261	0.84[CEU][hapmap];0.98[TSI][hapmap]
rs12666427	0.92[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.85[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12673697	0.95[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs12706626	0.82[EUR][1000 genomes]
rs12706629	0.85[EUR][1000 genomes]
rs13228116	0.91[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13233978	0.84[CEU][hapmap]
rs13240512	0.85[EUR][1000 genomes]
rs13307657	0.85[EUR][1000 genomes]
rs1383751	0.84[EUR][1000 genomes]
rs1468377	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1468378	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1481331	0.84[CEU][hapmap];0.85[EUR][1000 genomes]
rs1481332	0.84[CEU][hapmap];0.85[EUR][1000 genomes]
rs1481340	0.85[EUR][1000 genomes]
rs1481341	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1557969	0.92[ASN][1000 genomes]
rs1600743	0.85[EUR][1000 genomes]
rs1600745	0.84[EUR][1000 genomes]
rs1600746	0.85[EUR][1000 genomes]
rs16871295	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17147494	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17147496	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17147583	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1842615	0.83[EUR][1000 genomes]
rs1842616	0.85[EUR][1000 genomes]
rs1904975	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1994022	0.84[CEU][hapmap];0.85[EUR][1000 genomes]
rs1994023	0.85[EUR][1000 genomes]
rs2040926	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2054585	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2079368	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2079369	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2107936	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2127971	0.85[EUR][1000 genomes]
rs2170353	0.84[EUR][1000 genomes]
rs2219954	0.85[ASW][hapmap];0.92[CEU][hapmap];0.98[CHD][hapmap];0.81[JPT][hapmap];0.98[TSI][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2267707	0.95[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.87[LWK][hapmap];0.90[ASN][1000 genomes]
rs2267708	0.85[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs2286173	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2286174	0.92[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2299902	0.84[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs2299903	0.90[ASN][1000 genomes]
rs2301930	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2402749	0.95[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs2402753	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2402755	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2402756	0.84[CEU][hapmap];0.85[EUR][1000 genomes]
rs2402757	0.87[CEU][hapmap]
rs2402760	0.81[EUR][1000 genomes]
rs2402762	0.84[CEU][hapmap];0.98[TSI][hapmap];0.85[EUR][1000 genomes]
rs28409696	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28807101	0.85[EUR][1000 genomes]
rs28817916	0.85[EUR][1000 genomes]
rs28820311	0.84[EUR][1000 genomes]
rs2896360	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2896361	0.92[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3213667	0.92[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs33935352	0.90[ASN][1000 genomes]
rs34014883	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34204767	0.89[ASN][1000 genomes]
rs34395250	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34600520	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34618371	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35184624	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35332300	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35630355	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3807544	0.93[CHD][hapmap];0.90[ASN][1000 genomes]
rs3815221	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3919896	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4146110	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4279518	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4283967	0.80[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4311608	0.92[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4319000	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4360235	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4377885	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4379394	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4383910	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4397336	0.84[EUR][1000 genomes]
rs4422720	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4461840	0.85[EUR][1000 genomes]
rs4463363	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4467880	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4501523	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4529402	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4552839	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4568548	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4584095	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4728009	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4728010	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4728011	0.92[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4728012	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4731207	0.84[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs4731208	0.95[CHB][hapmap];0.85[JPT][hapmap];0.90[ASN][1000 genomes]
rs4731216	0.92[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4731217	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4731218	0.92[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4731221	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4731222	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4731223	0.92[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4731224	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56321660	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57458159	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62478914	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6415362	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6466948	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6466949	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6466950	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6466952	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6466953	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6466954	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6466955	0.92[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.90[JPT][hapmap];0.86[LWK][hapmap];0.91[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6466956	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6466960	0.83[EUR][1000 genomes]
rs6466961	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6466962	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6466963	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs6466964	0.85[EUR][1000 genomes]
rs6466965	0.84[EUR][1000 genomes]
rs6466966	0.84[CEU][hapmap];0.98[TSI][hapmap];0.85[EUR][1000 genomes]
rs6466967	0.85[EUR][1000 genomes]
rs6466968	0.84[CEU][hapmap];0.98[TSI][hapmap];0.85[EUR][1000 genomes]
rs6466969	0.85[EUR][1000 genomes]
rs6466970	0.85[EUR][1000 genomes]
rs6466971	0.82[EUR][1000 genomes]
rs6466972	0.85[EUR][1000 genomes]
rs6945104	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6948181	0.83[ASN][1000 genomes]
rs6948345	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6949341	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6953168	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6956499	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6956638	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6959244	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6959491	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6959665	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6960027	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6960139	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6960504	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6960683	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6961292	0.88[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.90[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap]
rs6961441	0.84[CEU][hapmap];0.98[TSI][hapmap]
rs6963177	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6963594	0.84[CEU][hapmap]
rs6966415	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6967707	0.84[CEU][hapmap];0.98[TSI][hapmap]
rs6967988	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6968187	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6968500	0.92[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs6968573	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6968693	0.84[CEU][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6971179	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs6971413	0.85[EUR][1000 genomes]
rs6973134	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6973447	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6973812	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6980448	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71576215	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs720615	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs720616	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs727506	0.92[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7357296	0.91[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7456392	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7776744	0.81[EUR][1000 genomes]
rs7777126	0.85[EUR][1000 genomes]
rs7778544	0.92[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7778956	0.92[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.91[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7780392	0.84[CEU][hapmap];0.85[EUR][1000 genomes]
rs7781148	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7782031	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7782327	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7782340	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7782354	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7782410	0.85[EUR][1000 genomes]
rs7782525	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7783781	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7786384	0.83[CEU][hapmap];0.85[EUR][1000 genomes]
rs7787025	0.84[EUR][1000 genomes]
rs7787765	0.85[EUR][1000 genomes]
rs7789859	0.91[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7790975	0.85[EUR][1000 genomes]
rs7791399	0.85[EUR][1000 genomes]
rs7791488	0.88[CEU][hapmap]
rs7792883	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7793258	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7793441	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7794631	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7794710	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7795199	0.85[EUR][1000 genomes]
rs7795218	0.85[EUR][1000 genomes]
rs7795233	0.84[CEU][hapmap];0.85[EUR][1000 genomes]
rs7795492	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7795605	0.84[CEU][hapmap];0.85[EUR][1000 genomes]
rs7795611	0.84[CEU][hapmap];0.85[EUR][1000 genomes]
rs7796015	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7796150	0.92[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.86[JPT][hapmap];0.81[LWK][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7799518	0.84[CEU][hapmap];0.98[TSI][hapmap];0.85[EUR][1000 genomes]
rs7799523	0.85[EUR][1000 genomes]
rs7799535	0.84[CEU][hapmap];0.85[EUR][1000 genomes]
rs7799747	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7799938	0.92[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7801140	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7806126	0.85[EUR][1000 genomes]
rs7807707	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7808203	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7811607	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7811608	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs922711	0.84[CEU][hapmap]
rs922712	0.84[CEU][hapmap]
rs9332427	0.85[EUR][1000 genomes]
rs962863	0.92[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9886177	0.92[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429809	chr7:123937674-124835925	Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
2	esv3446198	chr7:124358002-124586856	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs886704	RP11-3B12.1	cis	Artery Aorta	GTEx
rs886704	RP11-3B12.1	cis	Artery Tibial	GTEx
rs886704	RP11-3B12.4	cis	Artery Tibial	GTEx

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124419800-124423800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:124421200-124422800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:124421600-124423200	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr7:124421600-124423400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr7:124421800-124422800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr7:124421800-124422800	Enhancers	H9 Cell Line	embryonic stem cell
7	chr7:124421800-124423000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr7:124421800-124423400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr7:124422000-124422400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:124422000-124422400	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr7:124422000-124422400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr7:124422000-124422600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr7:124422000-124422600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr7:124422000-124422800	Enhancers	H1 Cell Line	embryonic stem cell
15	chr7:124422200-124422800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr7:124422200-124422800	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr7:124422200-124423000	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr7:124422200-124425000	Weak transcription	Fetal Lung	lung
19	chr7:124422200-124425200	Weak transcription	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

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