Variant report

Variant	rs10252443
Chromosome Location	chr7:124578931-124578932
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 362 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:355)

rs_ID	r²[population]
rs1006334	0.96[CEU][hapmap];0.91[GIH][hapmap];0.98[TSI][hapmap]
rs10081226	0.91[EUR][1000 genomes]
rs10081265	0.92[EUR][1000 genomes]
rs10081266	0.90[EUR][1000 genomes]
rs10081290	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs10081336	0.85[EUR][1000 genomes]
rs10081375	0.92[EUR][1000 genomes]
rs10085793	0.83[EUR][1000 genomes]
rs10085867	0.82[EUR][1000 genomes]
rs10085888	0.83[EUR][1000 genomes]
rs1011721	0.91[EUR][1000 genomes]
rs1011722	0.92[EUR][1000 genomes]
rs1011723	0.92[EUR][1000 genomes]
rs10156168	0.88[CEU][hapmap];0.91[GIH][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes]
rs1021080	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs10223980	0.83[EUR][1000 genomes]
rs10224946	0.85[EUR][1000 genomes]
rs10225140	0.83[EUR][1000 genomes]
rs10227119	0.95[CEU][hapmap];0.92[EUR][1000 genomes]
rs10228376	0.88[CEU][hapmap];0.91[GIH][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes]
rs10228459	0.85[EUR][1000 genomes]
rs10228682	0.88[CEU][hapmap];0.91[GIH][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes]
rs10228686	0.92[CEU][hapmap]
rs10229152	0.85[EUR][1000 genomes]
rs10231355	0.92[EUR][1000 genomes]
rs10231491	0.90[EUR][1000 genomes]
rs10231818	0.92[EUR][1000 genomes]
rs10233306	0.83[EUR][1000 genomes]
rs10233589	0.88[CEU][hapmap];0.80[EUR][1000 genomes]
rs10234592	0.96[CEU][hapmap]
rs10236403	0.84[EUR][1000 genomes]
rs10239507	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs10243479	0.88[EUR][1000 genomes]
rs10243490	0.84[EUR][1000 genomes]
rs10243736	0.81[EUR][1000 genomes]
rs10243992	0.90[EUR][1000 genomes]
rs10244797	0.87[EUR][1000 genomes]
rs10245872	0.85[EUR][1000 genomes]
rs10246553	0.81[EUR][1000 genomes]
rs10247349	0.92[CEU][hapmap]
rs10250202	0.81[EUR][1000 genomes]
rs10250911	0.88[CEU][hapmap];0.91[GIH][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes]
rs10252039	0.84[EUR][1000 genomes]
rs10252072	0.91[EUR][1000 genomes]
rs10252579	0.96[CEU][hapmap];0.91[GIH][hapmap];0.98[TSI][hapmap];0.87[EUR][1000 genomes]
rs10252798	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs10254199	0.92[CEU][hapmap]
rs10255209	0.86[EUR][1000 genomes]
rs10255638	0.96[CEU][hapmap];0.91[GIH][hapmap];0.98[TSI][hapmap];0.92[EUR][1000 genomes]
rs10256218	0.96[CEU][hapmap]
rs10257255	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs10257712	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs10258873	0.96[CEU][hapmap]
rs10260039	0.96[CEU][hapmap]
rs10260710	0.81[EUR][1000 genomes]
rs10263573	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs10264210	0.96[CEU][hapmap]
rs10264288	0.96[CEU][hapmap];0.91[GIH][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes]
rs10264766	0.86[EUR][1000 genomes]
rs1026836	0.92[CEU][hapmap];0.91[GIH][hapmap];0.95[TSI][hapmap]
rs1026839	0.92[CEU][hapmap];0.91[GIH][hapmap];0.93[TSI][hapmap]
rs10269011	0.83[EUR][1000 genomes]
rs10269342	0.88[CEU][hapmap];0.84[GIH][hapmap];0.89[TSI][hapmap]
rs10270051	0.96[CEU][hapmap]
rs10271687	0.83[EUR][1000 genomes]
rs10272583	0.83[CEU][hapmap];0.91[GIH][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes]
rs10272889	0.92[EUR][1000 genomes]
rs10274820	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs10275346	0.96[CEU][hapmap];0.91[GIH][hapmap];0.98[TSI][hapmap]
rs10276834	0.96[CEU][hapmap]
rs10279816	0.91[EUR][1000 genomes]
rs10280341	0.92[EUR][1000 genomes]
rs1031955	0.95[CEU][hapmap]
rs10500098	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs10954045	0.83[EUR][1000 genomes]
rs10954048	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs10954049	0.85[EUR][1000 genomes]
rs10954050	0.92[EUR][1000 genomes]
rs10954051	0.92[EUR][1000 genomes]
rs10954056	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs10954062	0.87[EUR][1000 genomes]
rs11761669	0.96[CEU][hapmap];0.91[GIH][hapmap];0.98[TSI][hapmap]
rs11763920	0.87[EUR][1000 genomes]
rs11767649	0.92[CEU][hapmap];0.84[GIH][hapmap];0.91[TSI][hapmap];0.83[EUR][1000 genomes]
rs11767737	0.95[CEU][hapmap];0.87[EUR][1000 genomes]
rs11769711	0.92[EUR][1000 genomes]
rs11975788	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs11980178	0.96[CEU][hapmap]
rs11980925	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs11981797	0.92[EUR][1000 genomes]
rs11983251	0.81[EUR][1000 genomes]
rs12111658	0.92[EUR][1000 genomes]
rs12111660	0.92[EUR][1000 genomes]
rs12112909	0.96[CEU][hapmap];0.91[GIH][hapmap];0.98[TSI][hapmap];0.92[EUR][1000 genomes]
rs12113765	0.96[CEU][hapmap]
rs12154816	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs12155120	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs12530981	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs12533560	0.86[EUR][1000 genomes]
rs12533918	0.96[CEU][hapmap]
rs12534466	0.92[CEU][hapmap];0.91[GIH][hapmap];0.95[TSI][hapmap]
rs12535807	0.96[CEU][hapmap];0.91[GIH][hapmap];0.98[TSI][hapmap]
rs12536017	0.86[EUR][1000 genomes]
rs12536146	0.92[EUR][1000 genomes]
rs12536575	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs12537161	0.85[EUR][1000 genomes]
rs12537431	0.96[CEU][hapmap]
rs12538083	0.86[EUR][1000 genomes]
rs12538333	0.80[CEU][hapmap];0.91[GIH][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes]
rs12538641	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs12539580	0.96[CEU][hapmap];0.91[GIH][hapmap];0.98[TSI][hapmap]
rs12540168	0.81[EUR][1000 genomes]
rs12540261	0.96[CEU][hapmap];0.91[GIH][hapmap];0.98[TSI][hapmap]
rs12666427	0.88[CEU][hapmap];0.91[GIH][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes]
rs12706626	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12706629	0.92[EUR][1000 genomes]
rs13224820	0.96[CEU][hapmap];0.91[GIH][hapmap];0.98[TSI][hapmap]
rs13228116	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs13231916	0.87[EUR][1000 genomes]
rs13233978	0.96[CEU][hapmap]
rs13234368	0.91[CEU][hapmap]
rs13234634	0.88[CEU][hapmap]
rs13240043	0.87[EUR][1000 genomes]
rs13240512	0.92[EUR][1000 genomes]
rs13307657	0.92[EUR][1000 genomes]
rs1383749	0.81[GIH][hapmap]
rs1383750	0.86[GIH][hapmap]
rs1383751	0.91[EUR][1000 genomes]
rs1404898	0.92[CEU][hapmap]
rs1468377	0.81[EUR][1000 genomes]
rs1468378	0.81[EUR][1000 genomes]
rs1471569	0.96[CEU][hapmap]
rs1471571	0.96[CEU][hapmap]
rs1481327	0.96[CEU][hapmap]
rs1481328	0.96[CEU][hapmap];0.91[GIH][hapmap];0.98[TSI][hapmap];0.87[EUR][1000 genomes]
rs1481329	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs1481330	0.92[CEU][hapmap]
rs1481331	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs1481332	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs1481333	0.96[CEU][hapmap]
rs1481337	0.92[CEU][hapmap];0.91[GIH][hapmap];0.98[TSI][hapmap]
rs1481340	0.92[EUR][1000 genomes]
rs1481341	0.88[CEU][hapmap];0.91[GIH][hapmap];0.95[TSI][hapmap];0.86[EUR][1000 genomes]
rs1481342	0.96[CEU][hapmap]
rs1481343	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs1525614	0.96[CEU][hapmap];0.91[GIH][hapmap];0.98[TSI][hapmap]
rs1525618	0.87[CEU][hapmap]
rs1525619	0.96[CEU][hapmap]
rs1531715	0.87[EUR][1000 genomes]
rs1531716	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs1552118	0.96[CEU][hapmap]
rs1552119	0.87[EUR][1000 genomes]
rs1552120	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs1600738	0.87[EUR][1000 genomes]
rs1600739	0.96[CEU][hapmap];0.80[GIH][hapmap];0.98[TSI][hapmap];0.87[EUR][1000 genomes]
rs1600740	0.86[EUR][1000 genomes]
rs1600741	0.92[CEU][hapmap]
rs1600743	0.92[EUR][1000 genomes]
rs1600745	0.91[EUR][1000 genomes]
rs1600746	0.92[EUR][1000 genomes]
rs17147583	0.81[EUR][1000 genomes]
rs17833562	0.85[JPT][hapmap]
rs1842615	0.90[EUR][1000 genomes]
rs1842616	0.92[EUR][1000 genomes]
rs1871770	0.96[CEU][hapmap];0.91[GIH][hapmap];0.98[TSI][hapmap];0.87[EUR][1000 genomes]
rs1871771	0.92[CEU][hapmap]
rs1904975	0.88[CEU][hapmap];0.91[GIH][hapmap];0.95[TSI][hapmap];0.86[EUR][1000 genomes]
rs1986124	0.96[CEU][hapmap]
rs1994022	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs1994023	0.92[EUR][1000 genomes]
rs1994024	0.96[CEU][hapmap]
rs1994025	0.96[CEU][hapmap]
rs2040926	0.81[EUR][1000 genomes]
rs2054585	0.86[EUR][1000 genomes]
rs2079368	0.83[EUR][1000 genomes]
rs2127971	0.92[EUR][1000 genomes]
rs2170351	0.92[CEU][hapmap]
rs2170353	0.91[EUR][1000 genomes]
rs2219954	0.88[CEU][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs2286173	0.81[EUR][1000 genomes]
rs2286174	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs2301930	0.81[EUR][1000 genomes]
rs2402756	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs2402757	1.00[CEU][hapmap]
rs2402760	0.88[EUR][1000 genomes]
rs2402762	0.96[CEU][hapmap];0.91[GIH][hapmap];0.98[TSI][hapmap];0.92[EUR][1000 genomes]
rs2402763	0.92[CEU][hapmap]
rs28409696	0.86[EUR][1000 genomes]
rs28491035	0.83[EUR][1000 genomes]
rs28807101	0.92[EUR][1000 genomes]
rs28817916	0.92[EUR][1000 genomes]
rs28820311	0.91[EUR][1000 genomes]
rs2896361	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs3213667	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs34014883	0.83[EUR][1000 genomes]
rs34395250	0.82[EUR][1000 genomes]
rs34600520	0.83[EUR][1000 genomes]
rs34618371	0.83[EUR][1000 genomes]
rs34630567	0.86[EUR][1000 genomes]
rs34865746	0.83[EUR][1000 genomes]
rs35184624	0.82[EUR][1000 genomes]
rs35630355	0.86[EUR][1000 genomes]
rs3815221	0.88[CEU][hapmap];0.91[GIH][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes]
rs3919896	0.86[EUR][1000 genomes]
rs4146110	0.86[EUR][1000 genomes]
rs4279518	0.84[EUR][1000 genomes]
rs4283967	0.88[GIH][hapmap];0.95[TSI][hapmap];0.86[EUR][1000 genomes]
rs4311608	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs4319000	0.84[EUR][1000 genomes]
rs4360235	0.84[EUR][1000 genomes]
rs4377885	0.88[CEU][hapmap];0.91[GIH][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes]
rs4379394	0.83[EUR][1000 genomes]
rs4383910	0.86[EUR][1000 genomes]
rs4397336	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4422720	0.82[EUR][1000 genomes]
rs4461840	0.92[EUR][1000 genomes]
rs4463363	0.88[CEU][hapmap];0.91[GIH][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes]
rs4501523	0.86[EUR][1000 genomes]
rs4529402	0.81[EUR][1000 genomes]
rs4552839	0.82[EUR][1000 genomes]
rs4568548	0.86[EUR][1000 genomes]
rs4584095	0.82[EUR][1000 genomes]
rs4728009	0.88[CEU][hapmap];0.91[GIH][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes]
rs4728010	0.83[EUR][1000 genomes]
rs4728011	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs4728012	0.83[EUR][1000 genomes]
rs4731216	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs4731217	0.82[EUR][1000 genomes]
rs4731218	0.88[CEU][hapmap];0.88[GIH][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes]
rs4731221	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs4731222	0.81[EUR][1000 genomes]
rs4731223	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs4731224	0.83[EUR][1000 genomes]
rs56321660	0.83[EUR][1000 genomes]
rs57458159	0.83[EUR][1000 genomes]
rs62478914	0.81[EUR][1000 genomes]
rs6415362	0.85[EUR][1000 genomes]
rs6466952	0.83[EUR][1000 genomes]
rs6466953	0.81[EUR][1000 genomes]
rs6466954	0.82[EUR][1000 genomes]
rs6466955	0.88[CEU][hapmap];0.91[GIH][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes]
rs6466956	0.83[EUR][1000 genomes]
rs6466962	0.81[EUR][1000 genomes]
rs6466963	0.96[CEU][hapmap];0.93[GIH][hapmap];0.91[EUR][1000 genomes]
rs6466964	0.92[EUR][1000 genomes]
rs6466965	0.91[EUR][1000 genomes]
rs6466966	0.96[CEU][hapmap];0.91[GIH][hapmap];0.98[TSI][hapmap];0.92[EUR][1000 genomes]
rs6466967	0.92[EUR][1000 genomes]
rs6466968	0.96[CEU][hapmap];0.91[GIH][hapmap];0.98[TSI][hapmap];0.92[EUR][1000 genomes]
rs6466969	0.92[EUR][1000 genomes]
rs6466970	0.92[EUR][1000 genomes]
rs6466971	0.89[EUR][1000 genomes]
rs6466972	0.92[EUR][1000 genomes]
rs6466982	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs6466989	0.92[CEU][hapmap]
rs6942997	0.96[CEU][hapmap]
rs6945104	0.88[CEU][hapmap];0.83[GIH][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes]
rs6948181	0.83[EUR][1000 genomes]
rs6948345	0.85[EUR][1000 genomes]
rs6949341	0.86[EUR][1000 genomes]
rs6952915	0.92[CEU][hapmap];0.91[GIH][hapmap];0.95[TSI][hapmap]
rs6953168	0.83[EUR][1000 genomes]
rs6954614	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs6956499	0.85[EUR][1000 genomes]
rs6956638	0.85[EUR][1000 genomes]
rs6957525	0.96[CEU][hapmap];0.91[GIH][hapmap];0.98[TSI][hapmap]
rs6959244	0.86[EUR][1000 genomes]
rs6959491	0.86[EUR][1000 genomes]
rs6959665	0.83[EUR][1000 genomes]
rs6960027	0.83[EUR][1000 genomes]
rs6960504	0.84[EUR][1000 genomes]
rs6960683	0.85[EUR][1000 genomes]
rs6961292	0.91[GIH][hapmap];0.95[TSI][hapmap]
rs6961441	0.96[CEU][hapmap];0.91[GIH][hapmap];0.98[TSI][hapmap]
rs6963594	0.96[CEU][hapmap]
rs6966415	0.85[EUR][1000 genomes]
rs6967707	0.96[CEU][hapmap];0.91[GIH][hapmap];0.98[TSI][hapmap]
rs6967988	0.83[EUR][1000 genomes]
rs6968187	0.86[EUR][1000 genomes]
rs6968573	0.84[EUR][1000 genomes]
rs6968693	0.86[EUR][1000 genomes]
rs6971179	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs6971413	0.92[EUR][1000 genomes]
rs6973134	0.82[EUR][1000 genomes]
rs6973812	0.88[CEU][hapmap];0.91[GIH][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes]
rs6977313	0.92[CEU][hapmap]
rs6980448	0.89[EUR][1000 genomes]
rs719972	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs723443	0.96[CEU][hapmap]
rs723444	0.96[CEU][hapmap]
rs727506	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs7357296	0.87[CEU][hapmap];0.85[EUR][1000 genomes]
rs7456392	0.85[EUR][1000 genomes]
rs7776744	0.88[EUR][1000 genomes]
rs7776821	0.96[CEU][hapmap];0.91[GIH][hapmap];0.98[TSI][hapmap];0.86[EUR][1000 genomes]
rs7777126	0.92[EUR][1000 genomes]
rs7778544	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs7778875	0.96[CEU][hapmap]
rs7778956	0.88[CEU][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes]
rs7779594	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs7780392	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs7781148	0.81[EUR][1000 genomes]
rs7782031	0.83[EUR][1000 genomes]
rs7782327	0.83[EUR][1000 genomes]
rs7782340	0.83[EUR][1000 genomes]
rs7782354	0.86[EUR][1000 genomes]
rs7782410	0.92[EUR][1000 genomes]
rs7782525	0.85[EUR][1000 genomes]
rs7786384	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs7787025	0.91[EUR][1000 genomes]
rs7787605	0.96[CEU][hapmap];0.91[GIH][hapmap];0.98[TSI][hapmap]
rs7787765	0.92[EUR][1000 genomes]
rs7788066	0.86[EUR][1000 genomes]
rs7788458	0.86[EUR][1000 genomes]
rs7789859	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs7790975	0.92[EUR][1000 genomes]
rs7791399	0.92[EUR][1000 genomes]
rs7791488	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs7792654	0.96[CEU][hapmap]
rs7793441	0.85[EUR][1000 genomes]
rs7794565	0.95[CEU][hapmap]
rs7794631	0.86[EUR][1000 genomes]
rs7794710	0.86[EUR][1000 genomes]
rs7794959	0.96[CEU][hapmap]
rs7795199	0.92[EUR][1000 genomes]
rs7795218	0.92[EUR][1000 genomes]
rs7795233	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs7795492	0.88[CEU][hapmap];0.91[GIH][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes]
rs7795605	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs7795611	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs7795934	0.87[EUR][1000 genomes]
rs7796015	0.83[EUR][1000 genomes]
rs7796150	0.88[CEU][hapmap];0.91[GIH][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes]
rs7799518	0.96[CEU][hapmap];0.91[GIH][hapmap];0.98[TSI][hapmap];0.92[EUR][1000 genomes]
rs7799523	0.92[EUR][1000 genomes]
rs7799535	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs7799712	0.95[CEU][hapmap]
rs7799771	0.96[CEU][hapmap]
rs7799938	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs7801140	0.83[EUR][1000 genomes]
rs7802007	0.96[CEU][hapmap];0.91[GIH][hapmap];0.98[TSI][hapmap];0.87[EUR][1000 genomes]
rs7802210	0.87[EUR][1000 genomes]
rs7806126	0.92[EUR][1000 genomes]
rs7806530	0.96[CEU][hapmap];0.86[GIH][hapmap];0.98[TSI][hapmap]
rs7808203	0.81[EUR][1000 genomes]
rs7810654	0.96[CEU][hapmap]
rs886704	0.80[CEU][hapmap];0.95[TSI][hapmap]
rs900047	0.92[CEU][hapmap];0.91[GIH][hapmap];0.95[TSI][hapmap]
rs922711	0.96[CEU][hapmap]
rs922712	0.96[CEU][hapmap]
rs9332427	0.92[EUR][1000 genomes]
rs962863	0.88[CEU][hapmap];0.91[GIH][hapmap];0.95[TSI][hapmap];0.86[EUR][1000 genomes]
rs9692367	0.86[EUR][1000 genomes]
rs9886177	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs998054	0.96[CEU][hapmap];0.88[GIH][hapmap];0.98[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429809	chr7:123937674-124835925	Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
2	esv3446198	chr7:124358002-124586856	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv889135	chr7:124462081-124584834	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv889137	chr7:124513770-124584834	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv889138	chr7:124518766-124584834	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv608342	chr7:124549573-124600505	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv1016655	chr7:124575684-124684279	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10252443	RP11-3B12.1	cis	Artery Tibial	GTEx
rs10252443	RP11-3B12.1	cis	Artery Aorta	GTEx
rs10252443	RP11-3B12.4	cis	Artery Tibial	GTEx

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124570200-124585400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:124575400-124580200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr7:124577400-124581200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr7:124578200-124579200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links