Variant report

Variant	rs1383750
Chromosome Location	chr7:124700766-124700767
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:124699558..124701618-chr7:125055753..125057701,2	K562	blood:
2	chr7:124699688..124701477-chr7:124956011..124957871,2	MCF-7	breast:

Extended variants
information (count: 262 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:259)

rs_ID	r²[population]
rs1006334	1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.81[TSI][hapmap]
rs10081226	0.84[ASN][1000 genomes]
rs10081265	0.84[ASN][1000 genomes]
rs10081290	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.82[ASN][1000 genomes]
rs10081336	0.84[ASN][1000 genomes]
rs10081375	0.84[ASN][1000 genomes]
rs1011721	0.85[ASN][1000 genomes]
rs1011722	0.85[ASN][1000 genomes]
rs1011723	0.85[ASN][1000 genomes]
rs1021080	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10227119	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.83[ASN][1000 genomes]
rs10228459	0.82[ASN][1000 genomes]
rs10228682	0.93[ASW][hapmap];0.95[GIH][hapmap]
rs10228686	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10231355	0.84[ASN][1000 genomes]
rs10231491	0.81[ASN][1000 genomes]
rs10231818	0.84[ASN][1000 genomes]
rs10234592	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10239507	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.85[ASN][1000 genomes]
rs10243479	0.81[ASN][1000 genomes]
rs10243992	0.84[ASN][1000 genomes]
rs10247349	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10252072	0.82[ASN][1000 genomes]
rs10252443	0.86[GIH][hapmap]
rs10252579	1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.81[TSI][hapmap];0.92[ASN][1000 genomes]
rs10252798	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.92[ASN][1000 genomes]
rs10254199	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10255638	0.82[ASW][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.87[MEX][hapmap];0.89[MKK][hapmap];0.81[TSI][hapmap];0.88[YRI][hapmap];0.84[ASN][1000 genomes]
rs10256218	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10257712	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.84[ASN][1000 genomes]
rs10258873	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10264210	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs10264288	0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.87[MEX][hapmap];0.84[ASN][1000 genomes]
rs10264766	0.84[ASN][1000 genomes]
rs1026836	1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap]
rs1026837	0.93[ASN][1000 genomes]
rs1026839	1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.93[ASN][1000 genomes]
rs10269342	1.00[CHB][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap]
rs10270051	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10272583	0.93[ASW][hapmap];0.95[GIH][hapmap]
rs10272889	0.84[ASN][1000 genomes]
rs10274820	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10275346	1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.81[TSI][hapmap]
rs10276834	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs10279816	0.84[ASN][1000 genomes]
rs10280341	0.84[ASN][1000 genomes]
rs1031955	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10500098	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.93[ASN][1000 genomes]
rs10954050	0.84[ASN][1000 genomes]
rs10954051	0.84[ASN][1000 genomes]
rs10954056	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.84[ASN][1000 genomes]
rs10954062	0.92[ASN][1000 genomes]
rs11761669	0.87[ASW][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.87[MEX][hapmap];0.91[MKK][hapmap];0.81[TSI][hapmap];0.85[YRI][hapmap]
rs11763920	0.93[ASN][1000 genomes]
rs11767649	1.00[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11767737	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11769711	0.84[ASN][1000 genomes]
rs11975363	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11980178	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs11981797	0.84[ASN][1000 genomes]
rs12111658	0.84[ASN][1000 genomes]
rs12111660	0.84[ASN][1000 genomes]
rs12112909	1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap];0.84[ASN][1000 genomes]
rs12113765	1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap]
rs12533918	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12534466	1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.93[ASN][1000 genomes]
rs12535807	0.82[ASW][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.87[MEX][hapmap];0.91[MKK][hapmap];0.81[TSI][hapmap];0.88[YRI][hapmap]
rs12536146	0.85[ASN][1000 genomes]
rs12537431	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs12538333	0.88[ASW][hapmap];0.95[GIH][hapmap];0.81[TSI][hapmap]
rs12538641	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.85[ASN][1000 genomes]
rs12539580	1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.81[TSI][hapmap]
rs12540261	1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.91[MKK][hapmap];0.83[TSI][hapmap];0.88[YRI][hapmap]
rs12706629	0.84[ASN][1000 genomes]
rs13224820	1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.81[TSI][hapmap]
rs13231916	0.93[ASN][1000 genomes]
rs13233978	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs13234368	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13234634	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13240043	0.91[ASN][1000 genomes]
rs13240512	0.84[ASN][1000 genomes]
rs13307657	0.85[ASN][1000 genomes]
rs1351471	0.93[ASN][1000 genomes]
rs1383749	0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1383751	0.84[ASN][1000 genomes]
rs1404898	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs1471571	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1481327	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1481328	1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.81[TSI][hapmap];0.92[ASN][1000 genomes]
rs1481329	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1481330	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1481331	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.84[ASN][1000 genomes]
rs1481332	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.84[ASN][1000 genomes]
rs1481337	0.82[ASW][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.89[MKK][hapmap];0.81[TSI][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1481338	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1481339	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1481340	0.84[ASN][1000 genomes]
rs1481341	0.88[ASW][hapmap];0.95[GIH][hapmap]
rs1481342	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap]
rs1481343	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1525614	0.82[ASW][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.87[MEX][hapmap];0.91[MKK][hapmap];0.81[TSI][hapmap];0.88[YRI][hapmap]
rs1525618	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1525619	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs1531715	0.92[ASN][1000 genomes]
rs1531716	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1552118	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs1552119	0.92[ASN][1000 genomes]
rs1552120	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1600738	0.93[ASN][1000 genomes]
rs1600739	1.00[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.93[ASN][1000 genomes]
rs1600740	0.93[ASN][1000 genomes]
rs1600741	1.00[YRI][hapmap]
rs1600743	0.84[ASN][1000 genomes]
rs1600745	0.84[ASN][1000 genomes]
rs1600746	0.84[ASN][1000 genomes]
rs1842615	0.83[ASN][1000 genomes]
rs1842616	0.84[ASN][1000 genomes]
rs1871770	1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap];0.92[ASN][1000 genomes]
rs1871771	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1904975	0.88[ASW][hapmap];0.95[GIH][hapmap]
rs1986124	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1994022	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.84[ASN][1000 genomes]
rs1994023	0.84[ASN][1000 genomes]
rs1994024	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1994025	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs2017928	0.92[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2127971	0.85[ASN][1000 genomes]
rs2170351	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2170353	0.85[ASN][1000 genomes]
rs2219953	0.93[ASN][1000 genomes]
rs2219954	0.83[GIH][hapmap]
rs2402756	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.84[ASN][1000 genomes]
rs2402757	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2402760	0.84[ASN][1000 genomes]
rs2402762	0.82[ASW][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.87[MEX][hapmap];0.91[MKK][hapmap];0.81[TSI][hapmap];0.88[YRI][hapmap];0.85[ASN][1000 genomes]
rs2402763	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs28491035	0.90[ASN][1000 genomes]
rs28807101	0.85[ASN][1000 genomes]
rs28817916	0.84[ASN][1000 genomes]
rs28820311	0.84[ASN][1000 genomes]
rs2929320	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2929323	1.00[ASN][1000 genomes]
rs2949802	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2968865	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs2968867	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34630567	0.92[ASN][1000 genomes]
rs34865746	0.93[ASN][1000 genomes]
rs35929436	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3900363	0.93[ASN][1000 genomes]
rs3903521	0.93[ASN][1000 genomes]
rs3903522	0.93[ASN][1000 genomes]
rs3903523	0.93[ASN][1000 genomes]
rs4272297	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4283967	0.88[ASW][hapmap];0.93[GIH][hapmap]
rs4377885	0.88[ASW][hapmap];0.95[GIH][hapmap]
rs4461840	0.82[ASN][1000 genomes]
rs4463363	0.88[ASW][hapmap];0.95[GIH][hapmap]
rs585608	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs589823	0.95[CHB][hapmap];0.85[CHD][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs597279	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs606229	0.95[CHB][hapmap];0.83[CHD][hapmap];0.90[JPT][hapmap];0.88[MEX][hapmap];0.83[YRI][hapmap];0.92[ASN][1000 genomes]
rs607260	0.95[CHB][hapmap];0.90[JPT][hapmap];0.83[YRI][hapmap];0.92[ASN][1000 genomes]
rs616697	0.89[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs628365	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap]
rs632459	0.95[CHB][hapmap];0.80[CHD][hapmap];0.89[JPT][hapmap]
rs635682	0.89[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs635736	0.92[ASN][1000 genomes]
rs636161	0.95[CHB][hapmap];0.85[CHD][hapmap];0.90[JPT][hapmap];0.88[MEX][hapmap];0.92[ASN][1000 genomes]
rs636721	0.92[ASN][1000 genomes]
rs637482	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs639239	0.92[ASN][1000 genomes]
rs6466955	0.95[GIH][hapmap]
rs6466963	1.00[CHB][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.91[MKK][hapmap];0.88[YRI][hapmap];0.83[ASN][1000 genomes]
rs6466964	0.84[ASN][1000 genomes]
rs6466965	0.84[ASN][1000 genomes]
rs6466966	0.82[ASW][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.87[MEX][hapmap];0.91[MKK][hapmap];0.81[TSI][hapmap];0.88[YRI][hapmap];0.84[ASN][1000 genomes]
rs6466967	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs6466968	0.82[ASW][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.87[MEX][hapmap];0.87[MKK][hapmap];0.81[TSI][hapmap];0.85[YRI][hapmap];0.84[ASN][1000 genomes]
rs6466969	0.84[ASN][1000 genomes]
rs6466970	0.85[ASN][1000 genomes]
rs6466971	0.84[ASN][1000 genomes]
rs6466972	0.85[ASN][1000 genomes]
rs6466982	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6466989	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs6466990	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6466993	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs648619	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs651869	0.95[CHB][hapmap];0.90[JPT][hapmap];0.85[YRI][hapmap];0.92[ASN][1000 genomes]
rs659987	0.89[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs662165	0.89[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs665753	0.95[CHB][hapmap];0.85[CHD][hapmap];0.84[GIH][hapmap];0.90[JPT][hapmap];0.88[MEX][hapmap];0.83[YRI][hapmap];0.92[ASN][1000 genomes]
rs672965	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs676037	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.83[YRI][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs683707	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.83[YRI][hapmap];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs684345	0.91[CHB][hapmap];0.85[CHD][hapmap];0.90[JPT][hapmap];0.88[MEX][hapmap];0.83[YRI][hapmap];0.92[ASN][1000 genomes]
rs685909	0.95[CHB][hapmap];0.85[CHD][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs6942997	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6945104	0.88[ASW][hapmap];0.89[GIH][hapmap]
rs6945951	0.93[ASN][1000 genomes]
rs6952915	1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap]
rs6954614	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6957525	1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.81[TSI][hapmap]
rs6961292	0.85[ASW][hapmap];0.95[GIH][hapmap]
rs6961441	0.88[ASW][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.87[MEX][hapmap];0.91[MKK][hapmap];0.81[TSI][hapmap];0.88[YRI][hapmap]
rs6963594	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6964090	0.90[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs6967707	1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.81[TSI][hapmap]
rs6971179	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6971413	0.85[ASN][1000 genomes]
rs6973812	0.88[ASW][hapmap];0.95[GIH][hapmap]
rs6977313	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs719972	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs723443	0.87[YRI][hapmap]
rs723444	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7776744	0.83[ASN][1000 genomes]
rs7776821	1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.81[TSI][hapmap];0.93[ASN][1000 genomes]
rs7777126	0.85[ASN][1000 genomes]
rs7778875	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7779594	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7780392	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.84[ASN][1000 genomes]
rs7786384	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.84[ASN][1000 genomes]
rs7787025	0.85[ASN][1000 genomes]
rs7787605	1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.81[TSI][hapmap]
rs7787765	0.85[ASN][1000 genomes]
rs7788066	0.91[ASN][1000 genomes]
rs7788458	0.92[ASN][1000 genomes]
rs7790975	0.84[ASN][1000 genomes]
rs7791399	0.84[ASN][1000 genomes]
rs7791488	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7792654	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7794565	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7794959	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7795199	0.84[ASN][1000 genomes]
rs7795218	0.84[ASN][1000 genomes]
rs7795233	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.84[ASN][1000 genomes]
rs7795492	0.88[ASW][hapmap];0.95[GIH][hapmap]
rs7795605	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.84[ASN][1000 genomes]
rs7795611	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.84[ASN][1000 genomes]
rs7795934	0.92[ASN][1000 genomes]
rs7796150	0.95[GIH][hapmap]
rs7799518	0.82[ASW][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.87[MEX][hapmap];0.91[MKK][hapmap];0.81[TSI][hapmap];0.88[YRI][hapmap];0.84[ASN][1000 genomes]
rs7799523	0.84[ASN][1000 genomes]
rs7799535	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.84[ASN][1000 genomes]
rs7799712	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7802007	0.82[ASW][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.87[MEX][hapmap];0.91[MKK][hapmap];0.81[TSI][hapmap];0.88[YRI][hapmap];0.92[ASN][1000 genomes]
rs7802210	0.92[ASN][1000 genomes]
rs7806126	0.85[ASN][1000 genomes]
rs7806530	0.82[ASW][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.87[MEX][hapmap];0.89[MKK][hapmap];0.81[TSI][hapmap];0.88[YRI][hapmap]
rs7806548	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7810654	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs792627	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs900047	1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.92[ASN][1000 genomes]
rs922711	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs922712	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs9332427	0.84[ASN][1000 genomes]
rs962863	0.95[GIH][hapmap]
rs9691875	0.92[ASN][1000 genomes]
rs9692367	0.92[ASN][1000 genomes]
rs998054	0.81[ASW][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.93[LWK][hapmap];0.91[MKK][hapmap];0.81[TSI][hapmap];0.88[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429809	chr7:123937674-124835925	Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
2	nsv889139	chr7:124600505-124767295	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	esv3394090	chr7:124602150-124900799	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs1383750	LMOD2	cis	cerebellum	SCAN
rs1383750	RP11-3B12.4	cis	Artery Tibial	GTEx
rs1383750	FLNC	cis	parietal	SCAN
rs1383750	RP11-3B12.1	cis	Artery Aorta	GTEx
rs1383750	RP11-3B12.1	cis	Artery Tibial	GTEx

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124698400-124701400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr7:124699400-124701400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr7:124699600-124701800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr7:124699800-124702800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr7:124699800-124703400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr7:124700600-124701200	Enhancers	Brain Substantia Nigra	brain
7	chr7:124700600-124702200	Enhancers	Brain Angular Gyrus	brain
8	chr7:124700600-124702800	Enhancers	HUVEC	blood vessel
9	chr7:124700600-124703600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Variant report

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