The 2.0 version of rSNPBase

Variant report

Variant rs12538083
Chromosome Location chr7:124554057-124554058
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:85 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr7:124462200-124568200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
2 chr7:124466400-124562200 Weak transcription Muscle Satellite Cultured Cells --
3 chr7:124466600-124563400 Weak transcription Primary T killer naive cells fromperipheralblood blood
4 chr7:124484200-124554400 Weak transcription HUVEC blood vessel
5 chr7:124498200-124568800 Weak transcription Brain Anterior Caudate brain
6 chr7:124522800-124568400 Weak transcription Brain Cingulate Gyrus brain
7 chr7:124527600-124562200 Weak transcription A549 lung
8 chr7:124527600-124569000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
9 chr7:124527600-124569000 Weak transcription Rectal Mucosa Donor 29 rectum
10 chr7:124528000-124567400 Weak transcription HepG2 liver
11 chr7:124529800-124564400 Weak transcription Primary T killer memory cells from peripheral blood blood
12 chr7:124530000-124569000 Weak transcription Fetal Adrenal Gland Adrenal Gland
13 chr7:124531400-124559800 Weak transcription Ovary ovary
14 chr7:124532000-124569000 Weak transcription Duodenum Mucosa Duodenum
15 chr7:124532600-124562600 Weak transcription Primary T helper naive cells fromperipheralblood blood
16 chr7:124532600-124568400 Weak transcription NHDF-Ad bronchial
17 chr7:124532600-124568800 Weak transcription Primary T regulatory cells fromperipheralblood blood
18 chr7:124532600-124569000 Weak transcription HSMM muscle
19 chr7:124532800-124557000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
20 chr7:124532800-124559000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
21 chr7:124532800-124568400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
22 chr7:124532800-124569000 Weak transcription Skeletal Muscle Female skeletal muscle
23 chr7:124533200-124562800 Weak transcription Primary T helper cells PMA-I stimulated --
24 chr7:124534600-124558400 Weak transcription Brain Hippocampus Middle brain
25 chr7:124535000-124556800 Weak transcription Brain Inferior Temporal Lobe brain
26 chr7:124535800-124563000 Weak transcription Primary T cells from cord blood blood
27 chr7:124537800-124566000 Weak transcription Primary T cells fromperipheralblood blood
28 chr7:124538000-124554200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
29 chr7:124538000-124555000 Weak transcription Dnd41 blood
30 chr7:124538000-124569200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
31 chr7:124539400-124556800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
32 chr7:124541000-124568600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
33 chr7:124541000-124569000 Weak transcription Fetal Muscle Leg muscle
34 chr7:124541400-124554600 Weak transcription Breast Myoepithelial Primary Cells Breast
35 chr7:124541400-124556800 Weak transcription Right Ventricle heart
36 chr7:124541400-124557000 Weak transcription HUES6 Cell Line embryonic stem cell
37 chr7:124541400-124557000 Weak transcription Primary hematopoietic stem cells short term culture blood
38 chr7:124541400-124557000 Weak transcription Gastric stomach
39 chr7:124541400-124562000 Weak transcription Sigmoid Colon Sigmoid Colon
40 chr7:124541400-124568800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
41 chr7:124541400-124568800 Weak transcription Fetal Intestine Small intestine
42 chr7:124541400-124569000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
43 chr7:124541400-124569000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
44 chr7:124541400-124569000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
45 chr7:124541400-124569400 Weak transcription Lung lung
46 chr7:124541600-124565800 Weak transcription Primary hematopoietic stem cells blood
47 chr7:124541600-124569200 Weak transcription Fetal Muscle Trunk muscle
48 chr7:124541800-124560200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
49 chr7:124542000-124554400 Weak transcription HUES64 Cell Line embryonic stem cell
50 chr7:124544600-124564400 Weak transcription Hela-S3 cervix

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Last update: Aug 31, 2015