Variant report

Variant	rs17329822
Chromosome Location	chr7:124899808-124899809
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10279503	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1086964	0.80[ASN][1000 genomes]
rs11768552	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12530620	0.82[EUR][1000 genomes]
rs12534822	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13226465	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1427579	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1427586	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1454126	0.80[ASN][1000 genomes]
rs17388970	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1902003	0.80[ASN][1000 genomes]
rs2003139	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34593234	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4731240	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6948143	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6957121	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6961484	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6967665	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6969306	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7797428	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7810705	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs792616	0.80[ASN][1000 genomes]
rs952001	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs952002	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3394090	chr7:124602150-124900799	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	esv2422188	chr7:124782873-125254203	Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1029627	chr7:124810399-124901651	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2761087	chr7:124823624-125429662	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124896000-124900000	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
2	chr7:124898000-124900000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:124898600-124901200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr7:124898800-124902000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr7:124899200-124901200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr7:124899400-124900000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr7:124899400-124900000	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
8	chr7:124899600-124900000	Transcr. at gene 5' and 3'	ES-I3 Cell Line	embryonic stem cell
9	chr7:124899800-124900000	Active TSS	HUES48 Cell Line	embryonic stem cell
10	chr7:124899800-124900000	Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr7:124899800-124901600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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