Variant report

Variant	rs12536883
Chromosome Location	chr7:129302803-129302804
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:129301627..129303933-chr7:129464656..129467241,2	K562	blood:
2	chr7:129300901..129303855-chr7:129648023..129650206,2	K562	blood:
3	chr7:129302797..129305366-chr7:129652511..129655155,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000244036	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17555024	1.00[AFR][1000 genomes]
rs17555614	1.00[AFR][1000 genomes]
rs17556694	1.00[AFR][1000 genomes]
rs17556909	1.00[AFR][1000 genomes]
rs17630605	1.00[AFR][1000 genomes]
rs17637863	1.00[AFR][1000 genomes]
rs1986403	1.00[AFR][1000 genomes]
rs2001330	1.00[AFR][1000 genomes]
rs3800602	1.00[AFR][1000 genomes]
rs4388399	1.00[AFR][1000 genomes]
rs4728170	1.00[AFR][1000 genomes]
rs4728176	1.00[AFR][1000 genomes]
rs4731602	1.00[AFR][1000 genomes]
rs4731609	1.00[AFR][1000 genomes]
rs4731619	1.00[AFR][1000 genomes]
rs4731622	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3477492	chr7:129298416-129304014	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3359315	chr7:129298866-129303114	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3395322	chr7:129299366-129303064	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129283800-129331600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr7:129286800-129304400	Weak transcription	NHLF	lung
3	chr7:129289200-129314000	Weak transcription	Fetal Brain Male	brain
4	chr7:129290000-129325800	Weak transcription	Stomach Mucosa	stomach
5	chr7:129290400-129304600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr7:129293800-129311200	Weak transcription	Brain Anterior Caudate	brain
7	chr7:129293800-129311400	Weak transcription	Brain Angular Gyrus	brain
8	chr7:129297200-129303200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:129297800-129349800	Weak transcription	Small Intestine	intestine
10	chr7:129298000-129304400	Weak transcription	NHDF-Ad	bronchial
11	chr7:129298600-129309800	Weak transcription	Fetal Heart	heart
12	chr7:129299000-129303400	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
13	chr7:129299800-129304400	Weak transcription	NH-A	brain
14	chr7:129299800-129304400	Weak transcription	NHEK	skin
15	chr7:129299800-129311400	Weak transcription	Colon Smooth Muscle	Colon
16	chr7:129300000-129304600	Weak transcription	Hela-S3	cervix
17	chr7:129300000-129314000	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr7:129300400-129303400	Strong transcription	Colonic Mucosa	Colon
19	chr7:129300600-129311800	Weak transcription	Pancreas	Pancrea
20	chr7:129301000-129304400	Weak transcription	Osteobl	bone
21	chr7:129301000-129330200	Weak transcription	Gastric	stomach
22	chr7:129301200-129311200	Weak transcription	Right Ventricle	heart
23	chr7:129301200-129312600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr7:129301800-129311800	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr7:129302000-129303200	Weak transcription	Lung	lung
26	chr7:129302000-129303400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr7:129302000-129304000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr7:129302000-129304000	Weak transcription	Fetal Brain Female	brain
29	chr7:129302000-129304200	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr7:129302000-129304200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr7:129302000-129304200	Weak transcription	HSMM	muscle
32	chr7:129302000-129304200	Weak transcription	HUVEC	blood vessel
33	chr7:129302000-129304400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr7:129302000-129304400	Weak transcription	HSMMtube	muscle
35	chr7:129302000-129304600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr7:129302000-129304800	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr7:129302000-129304800	Weak transcription	Ovary	ovary
38	chr7:129302000-129304800	Weak transcription	K562	blood
39	chr7:129302000-129305400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr7:129302000-129309600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr7:129302000-129310400	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr7:129302000-129310600	Weak transcription	Primary hematopoietic stem cells	blood
43	chr7:129302000-129311200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr7:129302000-129311200	Weak transcription	Brain Hippocampus Middle	brain
45	chr7:129302000-129311200	Weak transcription	Duodenum Mucosa	Duodenum
46	chr7:129302000-129311200	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr7:129302000-129311200	Weak transcription	Fetal Stomach	stomach
48	chr7:129302000-129311200	Weak transcription	Left Ventricle	heart
49	chr7:129302000-129311200	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr7:129302000-129311200	Weak transcription	Sigmoid Colon	Sigmoid Colon

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