Variant report

Variant	rs17556694
Chromosome Location	chr7:129357830-129357831
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:129357651..129362499-chr7:129363567..129368340,4	MCF-7	breast:
2	chr7:129357804..129359561-chr7:129418214..129420196,2	MCF-7	breast:
3	chr7:129356894..129359708-chr7:129468189..129470205,2	K562	blood:
4	chr7:129354570..129358914-chr7:129360217..129362870,6	K562	blood:
5	chr7:129351836..129354088-chr7:129355312..129358285,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10500119	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12536883	1.00[AFR][1000 genomes]
rs17160984	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17555024	1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs17555614	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs17556909	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17630605	1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs17637863	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1986403	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2001330	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs3735006	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3800602	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4388399	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4728170	1.00[AFR][1000 genomes]
rs4728172	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4728176	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4731602	1.00[AFR][1000 genomes]
rs4731609	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs4731616	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4731619	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4731622	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4731625	0.85[ASN][1000 genomes]
rs7782840	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129315600-129373600	Weak transcription	Psoas Muscle	Psoas
2	chr7:129319000-129380000	Weak transcription	NHDF-Ad	bronchial
3	chr7:129328000-129369000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr7:129337600-129359200	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr7:129339200-129381800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr7:129342800-129360200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr7:129342800-129367000	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr7:129343200-129379600	Weak transcription	Stomach Mucosa	stomach
9	chr7:129343400-129361200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr7:129345800-129359200	Strong transcription	Fetal Thymus	thymus
11	chr7:129346800-129372400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:129347000-129360200	Strong transcription	Primary B cells from peripheral blood	blood
13	chr7:129348200-129375600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr7:129348200-129392000	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr7:129348400-129372400	Strong transcription	Primary T helper cells PMA-I stimulated	--
16	chr7:129348400-129372400	Strong transcription	Dnd41	blood
17	chr7:129348600-129360600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr7:129348600-129360600	Strong transcription	Duodenum Mucosa	Duodenum
19	chr7:129348600-129360600	Strong transcription	Rectal Mucosa Donor 29	rectum
20	chr7:129348600-129360800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
21	chr7:129348600-129361200	Strong transcription	HUES48 Cell Line	embryonic stem cell
22	chr7:129348600-129372400	Strong transcription	HUES6 Cell Line	embryonic stem cell
23	chr7:129348600-129372600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr7:129348600-129375200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr7:129348600-129375800	Strong transcription	Primary T cells fromperipheralblood	blood
26	chr7:129348800-129358400	Strong transcription	Skeletal Muscle Male	skeletal muscle
27	chr7:129348800-129359400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr7:129348800-129359400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr7:129348800-129359400	Strong transcription	Fetal Intestine Small	intestine
30	chr7:129348800-129360600	Strong transcription	Primary T cells from cord blood	blood
31	chr7:129348800-129360600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr7:129348800-129360600	Strong transcription	Fetal Muscle Trunk	muscle
33	chr7:129348800-129361400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr7:129349000-129360600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr7:129349000-129361200	Strong transcription	HUES64 Cell Line	embryonic stem cell
36	chr7:129349400-129359600	Strong transcription	Primary B cells from cord blood	blood
37	chr7:129350000-129358000	Strong transcription	Brain Hippocampus Middle	brain
38	chr7:129350200-129360200	Strong transcription	Cortex derived primary cultured neurospheres	brain
39	chr7:129351600-129394800	Weak transcription	Hela-S3	cervix
40	chr7:129352600-129367000	Weak transcription	Colonic Mucosa	Colon
41	chr7:129352600-129371200	Weak transcription	HMEC	breast
42	chr7:129352800-129363800	Weak transcription	HUVEC	blood vessel
43	chr7:129353800-129367000	Weak transcription	Gastric	stomach
44	chr7:129354400-129360600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr7:129354800-129368400	Weak transcription	Fetal Heart	heart
46	chr7:129355000-129364200	Weak transcription	HSMMtube	muscle
47	chr7:129355200-129359400	Weak transcription	HepG2	liver
48	chr7:129355200-129380600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr7:129355800-129358800	Strong transcription	Liver	Liver
50	chr7:129356200-129359600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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