Variant report

Variant	rs17160984
Chromosome Location	chr7:129321323-129321324
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10500119	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11983488	0.95[AFR][1000 genomes]
rs17555024	1.00[JPT][hapmap]
rs17555614	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17556694	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17556909	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17630605	1.00[JPT][hapmap]
rs17637863	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1986403	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2001330	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3735006	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3800602	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4388399	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4728172	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4728176	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4731609	0.90[ASN][1000 genomes]
rs4731615	1.00[YRI][hapmap]
rs4731616	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4731619	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4731622	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73470476	0.89[AFR][1000 genomes]
rs7782840	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129283800-129331600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr7:129290000-129325800	Weak transcription	Stomach Mucosa	stomach
3	chr7:129297800-129349800	Weak transcription	Small Intestine	intestine
4	chr7:129301000-129330200	Weak transcription	Gastric	stomach
5	chr7:129302000-129331800	Weak transcription	Esophagus	oesophagus
6	chr7:129305000-129338200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr7:129307200-129352000	Weak transcription	NHLF	lung
8	chr7:129311200-129322600	Strong transcription	Fetal Thymus	thymus
9	chr7:129311400-129323800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr7:129311400-129352200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr7:129313000-129330200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr7:129313200-129321400	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr7:129314400-129330200	Weak transcription	Right Ventricle	heart
14	chr7:129314600-129329800	Weak transcription	Spleen	Spleen
15	chr7:129314800-129330200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr7:129314800-129351200	Weak transcription	Pancreas	Pancrea
17	chr7:129315000-129331400	Weak transcription	Colonic Mucosa	Colon
18	chr7:129315200-129329200	Weak transcription	NHEK	skin
19	chr7:129315200-129330200	Weak transcription	Brain Angular Gyrus	brain
20	chr7:129315200-129330200	Weak transcription	Rectal Smooth Muscle	rectum
21	chr7:129315200-129341800	Weak transcription	NH-A	brain
22	chr7:129315400-129331600	Weak transcription	HSMM	muscle
23	chr7:129315400-129357000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr7:129315600-129321400	Strong transcription	Dnd41	blood
25	chr7:129315600-129324600	Weak transcription	HUVEC	blood vessel
26	chr7:129315600-129330200	Weak transcription	Osteobl	bone
27	chr7:129315600-129331600	Weak transcription	Brain Anterior Caudate	brain
28	chr7:129315600-129331600	Weak transcription	HSMMtube	muscle
29	chr7:129315600-129373600	Weak transcription	Psoas Muscle	Psoas
30	chr7:129315800-129324600	Weak transcription	Brain Substantia Nigra	brain
31	chr7:129316000-129324600	Weak transcription	Brain Cingulate Gyrus	brain
32	chr7:129316000-129330000	Weak transcription	Fetal Muscle Trunk	muscle
33	chr7:129316000-129330200	Weak transcription	Brain Hippocampus Middle	brain
34	chr7:129316000-129331400	Weak transcription	Colon Smooth Muscle	Colon
35	chr7:129316000-129331600	Weak transcription	GM12878-XiMat	blood
36	chr7:129316200-129321800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr7:129316200-129329200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr7:129316200-129329400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr7:129316200-129330000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr7:129316200-129330200	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr7:129316200-129330200	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr7:129316400-129324600	Weak transcription	Fetal Muscle Leg	muscle
43	chr7:129316400-129324800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr7:129316400-129329000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr7:129316400-129329400	Weak transcription	Fetal Intestine Large	intestine
46	chr7:129316400-129330000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr7:129316400-129330200	Weak transcription	Fetal Brain Female	brain
48	chr7:129316400-129331400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr7:129316400-129350200	Weak transcription	Brain Germinal Matrix	brain
50	chr7:129316400-129357200	Weak transcription	Fetal Brain Male	brain

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