Variant report

Variant	rs3800602
Chromosome Location	chr7:129360201-129360202
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:129350668..129352868-chr7:129358441..129360338,2	K562	blood:
2	chr7:129358443..129361944-chr7:129389455..129392209,3	K562	blood:
3	chr7:129357651..129362499-chr7:129363567..129368340,4	MCF-7	breast:
4	chr7:129358443..129361588-chr7:129390162..129392270,3	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10500119	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12536883	1.00[AFR][1000 genomes]
rs17160984	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17555024	1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs17555614	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs17556694	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17556909	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17630605	1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs17637863	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1986403	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2001330	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];1.00[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs3735006	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4388399	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4728170	1.00[AFR][1000 genomes]
rs4728172	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];0.87[ASN][1000 genomes]
rs4728176	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4731602	1.00[AFR][1000 genomes]
rs4731609	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs4731616	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4731619	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4731622	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4731625	0.85[ASN][1000 genomes]
rs7782840	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129315600-129373600	Weak transcription	Psoas Muscle	Psoas
2	chr7:129319000-129380000	Weak transcription	NHDF-Ad	bronchial
3	chr7:129328000-129369000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr7:129339200-129381800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr7:129342800-129367000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr7:129343200-129379600	Weak transcription	Stomach Mucosa	stomach
7	chr7:129343400-129361200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr7:129346800-129372400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:129348200-129375600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr7:129348200-129392000	Strong transcription	Primary T helper cells fromperipheralblood	blood
11	chr7:129348400-129372400	Strong transcription	Primary T helper cells PMA-I stimulated	--
12	chr7:129348400-129372400	Strong transcription	Dnd41	blood
13	chr7:129348600-129360600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr7:129348600-129360600	Strong transcription	Duodenum Mucosa	Duodenum
15	chr7:129348600-129360600	Strong transcription	Rectal Mucosa Donor 29	rectum
16	chr7:129348600-129360800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
17	chr7:129348600-129361200	Strong transcription	HUES48 Cell Line	embryonic stem cell
18	chr7:129348600-129372400	Strong transcription	HUES6 Cell Line	embryonic stem cell
19	chr7:129348600-129372600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr7:129348600-129375200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr7:129348600-129375800	Strong transcription	Primary T cells fromperipheralblood	blood
22	chr7:129348800-129360600	Strong transcription	Primary T cells from cord blood	blood
23	chr7:129348800-129360600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr7:129348800-129360600	Strong transcription	Fetal Muscle Trunk	muscle
25	chr7:129348800-129361400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr7:129349000-129360600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr7:129349000-129361200	Strong transcription	HUES64 Cell Line	embryonic stem cell
28	chr7:129351600-129394800	Weak transcription	Hela-S3	cervix
29	chr7:129352600-129367000	Weak transcription	Colonic Mucosa	Colon
30	chr7:129352600-129371200	Weak transcription	HMEC	breast
31	chr7:129352800-129363800	Weak transcription	HUVEC	blood vessel
32	chr7:129353800-129367000	Weak transcription	Gastric	stomach
33	chr7:129354400-129360600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr7:129354800-129368400	Weak transcription	Fetal Heart	heart
35	chr7:129355000-129364200	Weak transcription	HSMMtube	muscle
36	chr7:129355200-129380600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr7:129356200-129360600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr7:129356400-129360400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr7:129356400-129360600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr7:129356400-129361200	Strong transcription	Stomach Smooth Muscle	stomach
41	chr7:129356400-129361200	Strong transcription	GM12878-XiMat	blood
42	chr7:129356600-129360400	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr7:129356600-129360600	Strong transcription	Duodenum Smooth Muscle	Duodenum
44	chr7:129356600-129360600	Strong transcription	Fetal Muscle Leg	muscle
45	chr7:129356600-129360600	Strong transcription	Lung	lung
46	chr7:129356600-129361000	Strong transcription	Fetal Stomach	stomach
47	chr7:129356800-129360400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
48	chr7:129356800-129360600	Strong transcription	Sigmoid Colon	Sigmoid Colon
49	chr7:129357000-129360400	Strong transcription	H1 Cell Line	embryonic stem cell
50	chr7:129357000-129360400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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