Variant report

Variant	rs3735006
Chromosome Location	chr7:129330353-129330354
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:129321375..129324178-chr7:129328402..129330581,2	K562	blood:
2	chr7:129329549..129331760-chr7:129332227..129334813,2	MCF-7	breast:
3	chr7:129311491..129314194-chr7:129329758..129331915,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10500119	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17160984	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17555024	1.00[JPT][hapmap]
rs17555614	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs17556694	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17556909	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17630605	1.00[JPT][hapmap]
rs17637863	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1986403	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2001330	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs3800602	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4388399	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4728172	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4728176	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4731609	0.87[ASN][1000 genomes]
rs4731616	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4731619	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4731622	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4731625	0.81[ASN][1000 genomes]
rs7782840	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129283800-129331600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr7:129297800-129349800	Weak transcription	Small Intestine	intestine
3	chr7:129302000-129331800	Weak transcription	Esophagus	oesophagus
4	chr7:129305000-129338200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr7:129307200-129352000	Weak transcription	NHLF	lung
6	chr7:129311400-129352200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr7:129314800-129351200	Weak transcription	Pancreas	Pancrea
8	chr7:129315000-129331400	Weak transcription	Colonic Mucosa	Colon
9	chr7:129315200-129341800	Weak transcription	NH-A	brain
10	chr7:129315400-129331600	Weak transcription	HSMM	muscle
11	chr7:129315400-129357000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr7:129315600-129331600	Weak transcription	Brain Anterior Caudate	brain
13	chr7:129315600-129331600	Weak transcription	HSMMtube	muscle
14	chr7:129315600-129373600	Weak transcription	Psoas Muscle	Psoas
15	chr7:129316000-129331400	Weak transcription	Colon Smooth Muscle	Colon
16	chr7:129316000-129331600	Weak transcription	GM12878-XiMat	blood
17	chr7:129316400-129331400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr7:129316400-129350200	Weak transcription	Brain Germinal Matrix	brain
19	chr7:129316400-129357200	Weak transcription	Fetal Brain Male	brain
20	chr7:129317600-129331600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr7:129317600-129338400	Weak transcription	K562	blood
22	chr7:129317800-129330400	Weak transcription	Primary hematopoietic stem cells	blood
23	chr7:129317800-129331200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr7:129317800-129331600	Weak transcription	Adipose Nuclei	Adipose
25	chr7:129317800-129331600	Weak transcription	Aorta	Aorta
26	chr7:129317800-129338400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr7:129317800-129338400	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr7:129318400-129331600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr7:129318600-129331600	Weak transcription	A549	lung
30	chr7:129318800-129331600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr7:129319000-129331400	Weak transcription	HepG2	liver
32	chr7:129319000-129347000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr7:129319000-129380000	Weak transcription	NHDF-Ad	bronchial
34	chr7:129319200-129351200	Weak transcription	Hela-S3	cervix
35	chr7:129320600-129331600	Weak transcription	Fetal Lung	lung
36	chr7:129320600-129350200	Weak transcription	Fetal Kidney	kidney
37	chr7:129320800-129330400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr7:129320800-129331400	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr7:129320800-129331400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr7:129320800-129331600	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr7:129322600-129331600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr7:129324800-129330400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr7:129325000-129350000	Weak transcription	Brain Substantia Nigra	brain
44	chr7:129328000-129334200	Strong transcription	Fetal Thymus	thymus
45	chr7:129328000-129334600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr7:129328000-129369000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr7:129328200-129335600	Strong transcription	Primary T helper cells fromperipheralblood	blood
48	chr7:129328400-129333400	Strong transcription	Thymus	Thymus
49	chr7:129328600-129334000	Strong transcription	Primary T helper cells PMA-I stimulated	--
50	chr7:129328800-129335400	Strong transcription	Primary T cells fromperipheralblood	blood

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