Variant report

Variant	rs12540524
Chromosome Location	chr7:108053401-108053402
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:108049821..108052079-chr7:108053231..108055054,2	MCF-7	breast:
2	chr7:108051946..108054538-chr7:108064091..108066003,2	MCF-7	breast:
3	chr7:107991147..107992916-chr7:108051189..108054156,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1014113	1.00[ASN][1000 genomes]
rs1034827	0.85[EUR][1000 genomes]
rs10487855	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10953570	0.96[ASN][1000 genomes]
rs12531222	0.90[EUR][1000 genomes]
rs1859776	1.00[ASN][1000 genomes]
rs2214912	1.00[ASN][1000 genomes]
rs2300047	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2395993	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
2	nsv888942	chr7:107893695-108055858	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv888943	chr7:107893695-108058574	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108036600-108054200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:108044600-108054600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr7:108046800-108054200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr7:108047000-108054200	Weak transcription	NHLF	lung
5	chr7:108047400-108054200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr7:108048000-108054200	Weak transcription	HUVEC	blood vessel
7	chr7:108049200-108054200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr7:108049200-108054200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr7:108049400-108053600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr7:108049400-108053800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr7:108049400-108056400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr7:108049600-108054200	Weak transcription	Brain Angular Gyrus	brain
13	chr7:108049800-108054200	Weak transcription	Brain Anterior Caudate	brain
14	chr7:108050000-108054200	Weak transcription	Fetal Muscle Leg	muscle
15	chr7:108050000-108054400	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr7:108050000-108054600	Weak transcription	Brain Cingulate Gyrus	brain
17	chr7:108050000-108055000	Weak transcription	Brain Germinal Matrix	brain
18	chr7:108050000-108055000	Weak transcription	Brain Substantia Nigra	brain
19	chr7:108050000-108056400	Weak transcription	Fetal Brain Female	brain
20	chr7:108050200-108054200	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr7:108050200-108054200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr7:108050200-108054400	Weak transcription	Brain Hippocampus Middle	brain
23	chr7:108050200-108054400	Weak transcription	Pancreas	Pancrea
24	chr7:108050200-108055200	Weak transcription	Fetal Brain Male	brain
25	chr7:108051800-108054200	Weak transcription	A549	lung

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