Variant report

Variant	rs1859776
Chromosome Location	chr7:108043038-108043039
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:108037200..108040749-chr7:108041126..108043530,3	MCF-7	breast:
2	chr7:108042175..108044661-chr7:108050644..108052443,2	K562	blood:
3	chr7:108040975..108043949-chr7:108092664..108095074,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1014113	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1016040	0.88[CEU][hapmap]
rs10224567	0.88[CEU][hapmap];0.82[AMR][1000 genomes]
rs10236888	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10487855	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10953570	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12540524	1.00[ASN][1000 genomes]
rs1558036	0.85[CEU][hapmap];1.00[MEX][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1558038	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1859766	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2057981	0.88[CEU][hapmap];1.00[MEX][hapmap]
rs2057982	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2214912	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2395993	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4591957	0.88[CEU][hapmap];0.82[AMR][1000 genomes]
rs6942769	1.00[MEX][hapmap];0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
2	nsv888942	chr7:107893695-108055858	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv888943	chr7:107893695-108058574	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108014800-108043200	Weak transcription	Brain Cingulate Gyrus	brain
2	chr7:108024000-108045600	Weak transcription	Brain Anterior Caudate	brain
3	chr7:108035000-108046600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr7:108036400-108049200	Weak transcription	Spleen	Spleen
5	chr7:108036600-108044600	Weak transcription	Brain Substantia Nigra	brain
6	chr7:108036600-108045600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr7:108036600-108046600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr7:108036600-108048000	Weak transcription	Brain Angular Gyrus	brain
9	chr7:108036600-108048000	Weak transcription	Pancreas	Pancrea
10	chr7:108036600-108054200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:108036800-108046600	Weak transcription	Brain Hippocampus Middle	brain
12	chr7:108037000-108044000	Weak transcription	Fetal Brain Male	brain
13	chr7:108037000-108046800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr7:108039200-108045000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr7:108040000-108048000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr7:108040200-108048800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr7:108040600-108046400	Weak transcription	Fetal Muscle Leg	muscle
18	chr7:108041000-108043200	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr7:108041800-108044400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr7:108042000-108043400	Weak transcription	Fetal Lung	lung
21	chr7:108042600-108046600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr7:108042800-108044200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr7:108042800-108044800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr7:108043000-108043400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr7:108043000-108043600	Enhancers	Fetal Intestine Small	intestine
26	chr7:108043000-108043800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr7:108043000-108044200	Enhancers	HMEC	breast
28	chr7:108043000-108044400	Enhancers	HUVEC	blood vessel
29	chr7:108043000-108044600	Enhancers	Fetal Intestine Large	intestine
30	chr7:108043000-108044800	Enhancers	A549	lung

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