Variant report

Variant	rs1558036
Chromosome Location	chr7:108060825-108060826
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:108059629..108061203-chr7:108069537..108072425,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1014113	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1016040	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10224567	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10236888	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10953570	0.93[EUR][1000 genomes]
rs12531222	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1558038	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1859766	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1859776	0.85[CEU][hapmap];1.00[MEX][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2057981	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];0.80[YRI][hapmap];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2057982	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2214912	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2300047	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4591957	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6942769	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108054800-108061000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:108055000-108062600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr7:108056600-108062400	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr7:108056800-108071000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr7:108057000-108062400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:108057200-108067200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr7:108057400-108061000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr7:108057600-108065800	Weak transcription	NHEK	skin
9	chr7:108057600-108066000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr7:108057600-108067000	Weak transcription	Brain Cingulate Gyrus	brain
11	chr7:108057600-108069000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr7:108057800-108064200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr7:108058400-108061600	Bivalent Enhancer	Primary hematopoietic stem cells	blood
14	chr7:108058600-108061000	Weak transcription	Brain Anterior Caudate	brain
15	chr7:108058800-108067400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr7:108058800-108071200	Weak transcription	Pancreas	Pancrea
17	chr7:108059000-108061800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr7:108059200-108063000	Flanking Active TSS	A549	lung
19	chr7:108059400-108061000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr7:108059400-108061600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr7:108059600-108062000	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr7:108059800-108073400	Weak transcription	Fetal Brain Female	brain
23	chr7:108060000-108061000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr7:108060000-108061000	Weak transcription	K562	blood
25	chr7:108060000-108061400	Enhancers	Osteobl	bone
26	chr7:108060400-108062600	Enhancers	HSMMtube	muscle
27	chr7:108060600-108061200	Enhancers	Brain Angular Gyrus	brain
28	chr7:108060600-108061600	Flanking Active TSS	HUVEC	blood vessel
29	chr7:108060600-108061800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr7:108060600-108061800	Enhancers	HSMM	muscle
31	chr7:108060800-108061200	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr7:108060800-108061200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr7:108060800-108061400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr7:108060800-108061400	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
35	chr7:108060800-108061600	Enhancers	NH-A	brain
36	chr7:108060800-108062600	Enhancers	ES-I3 Cell Line	embryonic stem cell

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