Variant report

Variant	rs2057982
Chromosome Location	chr7:108058767-108058768
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:108056974..108058876-chr7:108094408..108096175,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1014113	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1016040	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10224567	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10236888	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10953570	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12531222	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1558036	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1558038	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1859766	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1859776	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2057981	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2214912	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2300047	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4591957	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108054200-108058800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr7:108054200-108059200	Enhancers	HUVEC	blood vessel
3	chr7:108054800-108061000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:108055000-108062600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr7:108055400-108058800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:108055400-108060800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr7:108056600-108062400	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr7:108056800-108060000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr7:108056800-108071000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr7:108057000-108059400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr7:108057000-108059800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr7:108057000-108062400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr7:108057200-108060000	Weak transcription	Osteobl	bone
14	chr7:108057200-108067200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr7:108057400-108058800	Weak transcription	K562	blood
16	chr7:108057400-108059400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr7:108057400-108059400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr7:108057400-108061000	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr7:108057600-108059400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr7:108057600-108059400	Weak transcription	Fetal Brain Female	brain
21	chr7:108057600-108060600	Weak transcription	Brain Angular Gyrus	brain
22	chr7:108057600-108065800	Weak transcription	NHEK	skin
23	chr7:108057600-108066000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr7:108057600-108067000	Weak transcription	Brain Cingulate Gyrus	brain
25	chr7:108057600-108069000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr7:108057800-108058800	Weak transcription	Fetal Brain Male	brain
27	chr7:108057800-108059000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr7:108057800-108059200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr7:108057800-108059800	Weak transcription	Brain Hippocampus Middle	brain
30	chr7:108057800-108064200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr7:108058000-108060600	Weak transcription	HSMM	muscle
32	chr7:108058400-108058800	Enhancers	Pancreas	Pancrea
33	chr7:108058400-108059000	Genic enhancers	A549	lung
34	chr7:108058400-108059800	Enhancers	NH-A	brain
35	chr7:108058400-108061600	Bivalent Enhancer	Primary hematopoietic stem cells	blood
36	chr7:108058600-108059000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr7:108058600-108059000	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr7:108058600-108060400	Weak transcription	HSMMtube	muscle
39	chr7:108058600-108061000	Weak transcription	Brain Anterior Caudate	brain

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