Variant report

Variant	rs10487855
Chromosome Location	chr7:108049397-108049398
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:108037650..108039399-chr7:108047562..108049627,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1014113	0.99[ASN][1000 genomes]
rs1034827	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10953570	0.97[ASN][1000 genomes]
rs11983802	0.83[YRI][hapmap]
rs12531222	1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12540524	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16872576	0.90[YRI][hapmap]
rs16872577	0.83[YRI][hapmap]
rs1859776	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2214912	0.99[ASN][1000 genomes]
rs2300047	0.87[EUR][1000 genomes]
rs2395993	1.00[ASN][1000 genomes]
rs3752639	0.88[YRI][hapmap]
rs3763460	0.83[YRI][hapmap]
rs7792869	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
2	nsv888942	chr7:107893695-108055858	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv888943	chr7:107893695-108058574	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108036600-108054200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:108044000-108050200	Enhancers	Fetal Brain Male	brain
3	chr7:108044600-108054600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr7:108045200-108050000	Enhancers	Fetal Lung	lung
5	chr7:108046800-108049600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr7:108046800-108054200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr7:108047000-108049400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr7:108047000-108054200	Weak transcription	NHLF	lung
9	chr7:108047200-108049400	Weak transcription	Brain Hippocampus Middle	brain
10	chr7:108047400-108054200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr7:108047800-108050000	Enhancers	Fetal Muscle Leg	muscle
12	chr7:108048000-108050000	Enhancers	Brain Substantia Nigra	brain
13	chr7:108048000-108050200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
14	chr7:108048000-108054200	Weak transcription	HUVEC	blood vessel
15	chr7:108048200-108049400	Weak transcription	Brain Cingulate Gyrus	brain
16	chr7:108048200-108049400	Weak transcription	Brain Germinal Matrix	brain
17	chr7:108048600-108049600	Enhancers	Brain Angular Gyrus	brain
18	chr7:108048600-108050200	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr7:108048600-108050200	Enhancers	Pancreas	Pancrea
20	chr7:108048800-108049400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr7:108049000-108049400	Genic enhancers	A549	lung
22	chr7:108049000-108049800	Enhancers	Brain Anterior Caudate	brain
23	chr7:108049200-108049600	Flanking Active TSS	Fetal Brain Female	brain
24	chr7:108049200-108049600	Enhancers	Spleen	Spleen
25	chr7:108049200-108054200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr7:108049200-108054200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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