Variant report

Variant	rs7792869
Chromosome Location	chr7:108000508-108000509
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:107998008..108001072-chr7:108096682..108098603,3	MCF-7	breast:
2	chr7:107999436..108001521-chr7:108002531..108004980,2	K562	blood:
3	chr7:107998919..108001119-chr9:140083490..140085157,2	MCF-7	breast:
4	chr7:107999225..108000845-chr7:108077774..108079837,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000091129	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10487841	0.82[CEU][hapmap]
rs10487855	0.83[YRI][hapmap]
rs12531222	0.83[YRI][hapmap]
rs12534519	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12537209	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16872497	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16872512	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs16872515	0.83[AMR][1000 genomes]
rs16872517	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17134752	0.82[CEU][hapmap]
rs17155397	1.00[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap];0.95[AMR][1000 genomes]
rs17155405	1.00[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap];0.95[AMR][1000 genomes]
rs17155446	1.00[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap];0.95[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17155536	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17155579	0.82[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17155592	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17155613	0.82[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17155617	0.82[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17329871	1.00[CEU][hapmap]
rs17330779	1.00[CEU][hapmap]
rs17388677	1.00[CEU][hapmap]
rs17388872	1.00[CEU][hapmap]
rs17420235	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2024491	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2193243	1.00[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap]
rs2300020	0.95[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2300031	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs367668	0.82[CEU][hapmap]
rs55660243	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs56100765	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59164222	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61657144	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6944131	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6973148	0.82[CEU][hapmap]
rs73420238	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73714833	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73714837	0.85[ASN][1000 genomes]
rs7794233	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7811595	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.82[YRI][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7812138	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.83[YRI][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
2	nsv831090	chr7:107786650-108011196	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv888942	chr7:107893695-108055858	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv888943	chr7:107893695-108058574	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1030425	chr7:107910716-108041036	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv1031824	chr7:107935905-108006038	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv1017288	chr7:107939739-108000837	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107988000-108001000	Weak transcription	HSMMtube	muscle
2	chr7:107992600-108007400	Weak transcription	HUVEC	blood vessel
3	chr7:107998200-108000800	Enhancers	HepG2	liver
4	chr7:107998800-108003800	Weak transcription	Pancreas	Pancrea
5	chr7:107999200-108000800	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr7:107999200-108008800	Weak transcription	Brain Anterior Caudate	brain
7	chr7:107999200-108011200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr7:107999400-108000800	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr7:107999400-108003600	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr7:107999400-108003800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr7:107999600-108003800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:107999600-108009000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr7:108000000-108000600	Enhancers	A549	lung
14	chr7:108000000-108008400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr7:108000000-108008400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr7:108000200-108001000	Enhancers	Primary B cells from peripheral blood	blood
17	chr7:108000200-108001200	Weak transcription	Fetal Intestine Small	intestine
18	chr7:108000400-108001200	Enhancers	Adipose Nuclei	Adipose

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