Variant report

Variant	rs16872515
Chromosome Location	chr7:108011946-108011947
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs16872497	0.83[GIH][hapmap];1.00[MEX][hapmap]
rs16872512	0.82[CEU][hapmap];0.91[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16872517	0.91[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17155397	0.83[GIH][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap]
rs17155405	0.83[GIH][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap]
rs17155446	0.83[GIH][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap]
rs17155579	0.85[CEU][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.81[EUR][1000 genomes]
rs17155592	1.00[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17155613	0.85[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs17155617	0.85[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.98[EUR][1000 genomes]
rs17420235	0.93[EUR][1000 genomes]
rs2193243	0.83[GIH][hapmap];1.00[MEX][hapmap]
rs55660243	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61657144	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73714837	0.98[EUR][1000 genomes]
rs7792869	0.83[AMR][1000 genomes]
rs7794233	0.83[GIH][hapmap];0.84[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
2	nsv888942	chr7:107893695-108055858	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv888943	chr7:107893695-108058574	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv1030425	chr7:107910716-108041036	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108004000-108016600	Weak transcription	Pancreas	Pancrea
2	chr7:108004400-108016600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr7:108009200-108012600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr7:108009400-108012200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr7:108009400-108013200	Weak transcription	HUVEC	blood vessel
6	chr7:108009400-108016600	Weak transcription	Brain Angular Gyrus	brain
7	chr7:108010800-108012400	Weak transcription	A549	lung
8	chr7:108011200-108012800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr7:108011600-108012000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:108011600-108012000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr7:108011800-108015800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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