Variant report

Variant	rs17155579
Chromosome Location	chr7:108008375-108008376
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:107991896..107993618-chr7:108006610..108008809,2	MCF-7	breast:
2	chr7:107997597..108000598-chr7:108005435..108008873,4	MCF-7	breast:
3	chr7:108006947..108010062-chr7:108010245..108014925,5	MCF-7	breast:
4	chr7:108007896..108010349-chr7:108095671..108097196,3	MCF-7	breast:
5	chr7:108000928..108003876-chr7:108005996..108008885,2	MCF-7	breast:
6	chr7:107974565..107976099-chr7:108007204..108009580,2	MCF-7	breast:
7	chr7:107934022..107936872-chr7:108006050..108008513,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000091129	Chromatin interaction
ENSG00000266112	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12534519	0.85[ASN][1000 genomes]
rs12537209	0.85[ASN][1000 genomes]
rs16872497	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.93[ASN][1000 genomes]
rs16872512	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16872515	0.85[CEU][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.81[EUR][1000 genomes]
rs16872517	0.82[CEU][hapmap];0.92[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.91[ASN][1000 genomes]
rs17155397	0.82[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap]
rs17155405	0.82[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap]
rs17155446	0.82[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.82[ASN][1000 genomes]
rs17155536	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17155592	0.82[CEU][hapmap];0.92[CHB][hapmap];0.95[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.91[ASN][1000 genomes]
rs17155613	1.00[CEU][hapmap];0.92[CHB][hapmap];0.95[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.92[TSI][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17155617	1.00[CEU][hapmap];0.92[CHB][hapmap];0.95[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17329871	0.82[CEU][hapmap]
rs17330779	0.82[CEU][hapmap]
rs17388677	0.82[CEU][hapmap]
rs17388872	0.82[CEU][hapmap]
rs17420235	0.82[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2024491	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2193243	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap]
rs2300020	0.82[ASN][1000 genomes]
rs2300031	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs55660243	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56100765	0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs59164222	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs61657144	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6944131	0.96[ASN][1000 genomes]
rs73420238	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73714833	0.96[ASN][1000 genomes]
rs73714837	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7792869	0.82[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7794233	0.82[CEU][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7811595	0.82[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs7812138	0.82[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
2	nsv831090	chr7:107786650-108011196	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv888942	chr7:107893695-108055858	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv888943	chr7:107893695-108058574	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1030425	chr7:107910716-108041036	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107999200-108008800	Weak transcription	Brain Anterior Caudate	brain
2	chr7:107999200-108011200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:107999600-108009000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:108000000-108008400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr7:108000000-108008400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr7:108004000-108016600	Weak transcription	Pancreas	Pancrea
7	chr7:108004400-108016600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr7:108007200-108008400	Weak transcription	Fetal Brain Male	brain
9	chr7:108007200-108009400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr7:108007400-108009400	Enhancers	HUVEC	blood vessel
11	chr7:108007600-108008400	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr7:108008000-108008600	Flanking Active TSS	A549	lung
13	chr7:108008000-108009400	Enhancers	Muscle Satellite Cultured Cells	--
14	chr7:108008000-108010600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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