Variant report

Variant	rs12544776
Chromosome Location	chr8:91279413-91279414
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12544366	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12545140	0.81[AMR][1000 genomes]
rs12549515	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12549660	0.83[AMR][1000 genomes]
rs7016389	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72606651	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72606652	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72606653	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72606654	0.86[EUR][1000 genomes]
rs72606655	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72606656	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72606657	0.80[AMR][1000 genomes]
rs970473	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758164	chr8:91000786-91329669	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv2759628	chr8:91000786-91329669	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91275600-91283800	Weak transcription	K562	blood
2	chr8:91279200-91280200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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