Variant report

Variant	rs12544366
Chromosome Location	chr8:91258669-91258670
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:91010957..91014069-chr8:91255866..91259257,5	MCF-7	breast:
2	chr8:91017521..91019447-chr8:91254781..91258818,3	MCF-7	breast:
3	chr8:91242047..91244608-chr8:91257106..91259132,2	K562	blood:
4	chr8:91247048..91249501-chr8:91258376..91262700,4	K562	blood:

Variant related genes	Relation type
ENSG00000104325	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10108327	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12056604	0.82[EUR][1000 genomes]
rs12544776	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12545140	0.97[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12546302	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12547394	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12549515	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12549630	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12549660	0.99[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12549875	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12550324	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16904149	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16904193	0.95[CHB][hapmap];0.93[JPT][hapmap];0.99[ASN][1000 genomes]
rs16904195	0.95[CHB][hapmap];0.93[JPT][hapmap];0.99[ASN][1000 genomes]
rs2189257	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2285725	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4735301	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs59497517	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6470808	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.86[EUR][1000 genomes]
rs6470854	0.82[EUR][1000 genomes]
rs6470856	0.82[EUR][1000 genomes]
rs67422313	0.84[EUR][1000 genomes]
rs7016389	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72606643	0.82[EUR][1000 genomes]
rs72606646	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72606647	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72606648	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72606649	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72606650	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72606651	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72606652	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72606653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72606654	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72606655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72606656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72606657	0.96[AMR][1000 genomes]
rs7824654	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7826142	0.82[EUR][1000 genomes]
rs970473	0.97[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758164	chr8:91000786-91329669	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv2759628	chr8:91000786-91329669	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91257000-91265800	Strong transcription	K562	blood

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