Variant report

Variant	rs7826142
Chromosome Location	chr8:91200676-91200677
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:91193596..91196582-chr8:91200011..91201961,3	K562	blood:
2	chr8:91199087..91202530-chr8:91204069..91207445,5	K562	blood:
3	chr8:91193596..91196355-chr8:91200011..91201961,2	K562	blood:
4	chr8:91200381..91201934-chr8:91204615..91207445,3	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs12056604	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12544366	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12546302	1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs12547394	0.95[EUR][1000 genomes]
rs12548716	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12549630	0.91[EUR][1000 genomes]
rs12549875	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12550324	0.91[EUR][1000 genomes]
rs13439366	0.85[AFR][1000 genomes]
rs16904073	0.84[AFR][1000 genomes]
rs16904149	1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs2189257	0.95[EUR][1000 genomes]
rs2285725	0.95[EUR][1000 genomes]
rs28373165	0.84[AFR][1000 genomes]
rs28703227	0.82[AFR][1000 genomes]
rs59497517	0.95[EUR][1000 genomes]
rs6470808	1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs67422313	0.93[EUR][1000 genomes]
rs6986838	0.85[AFR][1000 genomes]
rs72606643	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72606646	0.93[EUR][1000 genomes]
rs72606647	0.95[EUR][1000 genomes]
rs72606648	0.95[EUR][1000 genomes]
rs72606649	0.91[EUR][1000 genomes]
rs72606650	0.91[EUR][1000 genomes]
rs72606651	0.82[EUR][1000 genomes]
rs72606652	0.82[EUR][1000 genomes]
rs72606653	0.82[EUR][1000 genomes]
rs72606654	0.82[EUR][1000 genomes]
rs72606655	0.82[EUR][1000 genomes]
rs72606656	0.82[EUR][1000 genomes]
rs73295203	0.82[AFR][1000 genomes]
rs73295213	0.85[AFR][1000 genomes]
rs73295218	0.85[AFR][1000 genomes]
rs73295220	0.85[AFR][1000 genomes]
rs7824654	1.00[EUR][1000 genomes]
rs9650106	0.85[AFR][1000 genomes]
rs9650108	0.85[AFR][1000 genomes]
rs9918841	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758164	chr8:91000786-91329669	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv2759628	chr8:91000786-91329669	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	esv2757281	chr8:91090821-91235335	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv470225	chr8:91113616-91229254	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
5	nsv891184	chr8:91114698-91222654	Active TSS Genic enhancers Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
6	esv35109	chr8:91150726-91226940	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
7	nsv818643	chr8:91153308-91212148	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7826142	CXCL11	trans	brain	seeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91199400-91200800	Enhancers	Fetal Intestine Large	intestine
2	chr8:91200200-91201400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr8:91200600-91202600	Enhancers	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links