Variant report
| Variant | rs6470856 |
|---|---|
| Chromosome Location | chr8:91286655-91286656 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:91284015..91286778-chr8:91287725..91290607,4 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs10108327 | 1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12544366 | 0.82[EUR][1000 genomes] |
| rs12545140 | 1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12549515 | 0.93[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs12549660 | 0.93[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs4735301 | 0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6470854 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7011592 | 0.85[AFR][1000 genomes] |
| rs72606651 | 0.82[EUR][1000 genomes] |
| rs72606652 | 0.82[EUR][1000 genomes] |
| rs72606653 | 0.82[EUR][1000 genomes] |
| rs72606654 | 0.82[EUR][1000 genomes] |
| rs72606655 | 0.82[EUR][1000 genomes] |
| rs72606656 | 0.82[EUR][1000 genomes] |
| rs72606657 | 0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs73308778 | 0.84[AFR][1000 genomes] |
| rs970473 | 1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2758164 | chr8:91000786-91329669 | Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 2 | esv2759628 | chr8:91000786-91329669 | Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:91285600-91290200 | Weak transcription | K562 | blood |
