Variant report

Variant	rs16904195
Chromosome Location	chr8:91258967-91258968
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12544366	0.95[CHB][hapmap];0.93[JPT][hapmap];0.99[ASN][1000 genomes]
rs12546302	0.91[CHB][hapmap];0.82[CHD][hapmap];0.82[JPT][hapmap];0.90[MEX][hapmap]
rs12550324	0.81[ASN][1000 genomes]
rs16904149	0.91[CHB][hapmap];0.82[JPT][hapmap];0.90[MEX][hapmap]
rs16904193	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6470808	0.91[CHB][hapmap];0.82[CHD][hapmap];0.82[JPT][hapmap]
rs72606649	0.81[ASN][1000 genomes]
rs72606650	0.81[ASN][1000 genomes]
rs72606651	0.93[ASN][1000 genomes]
rs72606652	0.95[ASN][1000 genomes]
rs72606653	0.99[ASN][1000 genomes]
rs72606654	0.95[ASN][1000 genomes]
rs72606655	0.95[ASN][1000 genomes]
rs72606656	0.95[ASN][1000 genomes]
rs73695320	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758164	chr8:91000786-91329669	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv2759628	chr8:91000786-91329669	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16904195	RIPK2	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91257000-91265800	Strong transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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