Variant report

Variant	rs12544955
Chromosome Location	chr8:126459955-126459956
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:126454288..126457067-chr8:126458525..126461790,3	MCF-7	breast:
2	chr8:126459529..126461149-chr8:126475843..126477879,2	K562	blood:
3	chr8:126447250..126449924-chr8:126458992..126464226,4	MCF-7	breast:
4	chr8:126458087..126460139-chr8:126462505..126465905,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000266452	Chromatin interaction

rs_ID	r²[population]
rs12547199	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12678799	0.84[EUR][1000 genomes]
rs12679189	0.82[EUR][1000 genomes]
rs13273254	0.83[EUR][1000 genomes]
rs17320616	0.85[EUR][1000 genomes]
rs2003370	0.85[EUR][1000 genomes]
rs2003371	0.85[EUR][1000 genomes]
rs34321324	0.86[EUR][1000 genomes]
rs34447699	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34843049	0.86[EUR][1000 genomes]
rs6470355	0.86[EUR][1000 genomes]
rs68089270	0.84[EUR][1000 genomes]
rs6983834	0.84[EUR][1000 genomes]
rs71516786	0.85[EUR][1000 genomes]

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126450600-126463800	Weak transcription	Hela-S3	cervix
2	chr8:126451000-126462400	Weak transcription	Liver	Liver
3	chr8:126452400-126464400	Weak transcription	Spleen	Spleen
4	chr8:126452800-126462800	Weak transcription	A549	lung
5	chr8:126453000-126464000	Weak transcription	NHEK	skin
6	chr8:126453200-126464000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr8:126453200-126464400	Weak transcription	Lung	lung
8	chr8:126457200-126460000	Enhancers	Fetal Muscle Leg	muscle
9	chr8:126457200-126460000	Enhancers	Right Ventricle	heart
10	chr8:126457200-126460000	Enhancers	HSMMtube	muscle
11	chr8:126457200-126460400	Enhancers	Fetal Heart	heart
12	chr8:126457200-126460600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr8:126457400-126460000	Enhancers	H1 Cell Line	embryonic stem cell
14	chr8:126457400-126460000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr8:126457800-126460000	Enhancers	Left Ventricle	heart
16	chr8:126458600-126460000	Enhancers	Stomach Smooth Muscle	stomach
17	chr8:126458800-126460000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
18	chr8:126459000-126460000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
19	chr8:126459400-126464000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr8:126459400-126464000	Weak transcription	Psoas Muscle	Psoas
21	chr8:126459600-126460200	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr8:126459600-126464000	Weak transcription	Placenta	Placenta
23	chr8:126459600-126464200	Weak transcription	NH-A	brain
24	chr8:126459600-126464400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr8:126459800-126460200	Enhancers	K562	blood
26	chr8:126459800-126464000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr8:126459800-126464000	Weak transcription	Osteobl	bone
28	chr8:126459800-126464200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr8:126459800-126464200	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr8:126459800-126464200	Weak transcription	Esophagus	oesophagus
31	chr8:126459800-126464200	Weak transcription	Fetal Muscle Trunk	muscle
32	chr8:126459800-126466400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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