Variant report

Variant	rs2003370
Chromosome Location	chr8:126468831-126468832
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:126466293..126469135-chr8:126479077..126480998,2	MCF-7	breast:
2	chr8:126466479..126469159-chr8:126470808..126473405,2	K562	blood:
3	chr8:126467665..126470329-chr8:126485659..126488086,3	MCF-7	breast:
4	chr8:126442496..126444160-chr8:126467383..126468997,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000173334	Chromatin interaction
ENSG00000253111	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10956249	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs12544593	0.81[EUR][1000 genomes]
rs12544955	0.85[EUR][1000 genomes]
rs12545963	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12547199	0.90[CEU][hapmap];0.85[EUR][1000 genomes]
rs12677676	0.88[CHB][hapmap];0.83[JPT][hapmap]
rs12678799	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12679184	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12679189	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12679547	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13258507	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs13265432	0.84[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes]
rs13273254	0.89[EUR][1000 genomes]
rs17320616	0.94[CEU][hapmap];0.91[EUR][1000 genomes]
rs17406109	0.89[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.88[GIH][hapmap];0.90[JPT][hapmap];0.84[TSI][hapmap];0.81[EUR][1000 genomes]
rs2003371	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34321324	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34417638	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34447699	0.87[EUR][1000 genomes]
rs34604874	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34843049	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35309034	0.81[ASN][1000 genomes]
rs4567057	0.89[CEU][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4567059	0.89[CEU][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4592055	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6470355	0.95[CEU][hapmap];0.83[GIH][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs68089270	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6983834	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7015677	1.00[CHB][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71516786	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7828194	0.81[EUR][1000 genomes]
rs7828701	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2003370	WDR67	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126464800-126470800	Weak transcription	Lung	lung
2	chr8:126464800-126478000	Weak transcription	Gastric	stomach
3	chr8:126465200-126471800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:126465200-126477800	Weak transcription	Fetal Heart	heart
5	chr8:126465600-126470400	Weak transcription	Pancreas	Pancrea
6	chr8:126468200-126470200	Weak transcription	Hela-S3	cervix

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