Variant report

Variant	rs12677676
Chromosome Location	chr8:126502526-126502527
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:126441301..126442838-chr8:126502180..126504395,2	MCF-7	breast:
2	chr8:126487669..126490463-chr8:126500662..126505453,4	MCF-7	breast:
3	chr8:126501580..126503406-chr8:126515565..126518196,2	K562	blood:
4	chr8:126488058..126489576-chr8:126500538..126503490,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000173334	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10956249	0.89[CHB][hapmap]
rs12544593	0.88[ASN][1000 genomes]
rs12545963	0.89[CHB][hapmap];0.83[JPT][hapmap];0.91[ASN][1000 genomes]
rs12679184	0.91[ASN][1000 genomes]
rs12679189	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs12679547	0.84[CEU][hapmap];0.89[CHB][hapmap];0.83[JPT][hapmap];0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs13258507	0.85[CEU][hapmap];0.89[CHB][hapmap];0.83[JPT][hapmap];0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13265432	0.89[CHB][hapmap];0.88[ASN][1000 genomes]
rs13271368	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17406109	0.89[CHB][hapmap];0.83[CHD][hapmap];0.91[MEX][hapmap];0.88[ASN][1000 genomes]
rs2003370	0.88[CHB][hapmap];0.83[JPT][hapmap]
rs34087092	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34417638	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs34604874	0.91[ASN][1000 genomes]
rs35309034	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4567057	0.89[CHB][hapmap];0.87[CHD][hapmap];0.83[JPT][hapmap];0.95[MEX][hapmap];0.91[ASN][1000 genomes]
rs4567059	0.89[CHB][hapmap];0.87[CHD][hapmap];0.83[JPT][hapmap];0.95[MEX][hapmap];0.91[ASN][1000 genomes]
rs4592055	1.00[CHB][hapmap];0.81[JPT][hapmap];0.91[ASN][1000 genomes]
rs4870941	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4870942	0.84[EUR][1000 genomes]
rs55921265	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6989280	0.90[CEU][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes]
rs7015677	0.89[CHB][hapmap];0.84[ASN][1000 genomes]
rs7828194	0.88[ASN][1000 genomes]
rs7828701	0.89[CHB][hapmap];0.83[JPT][hapmap];0.91[ASN][1000 genomes]
rs7846135	0.86[EUR][1000 genomes]
rs8180991	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891437	chr8:126470817-126629328	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12677676	FBXO32	cis	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126496600-126503000	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr8:126498600-126509200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr8:126498600-126509800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr8:126499000-126503200	Weak transcription	Primary B cells from cord blood	blood
5	chr8:126499400-126503000	Weak transcription	Placenta	Placenta
6	chr8:126502000-126502600	Enhancers	Primary hematopoietic stem cells	blood
7	chr8:126502200-126502600	Flanking Active TSS	Liver	Liver
8	chr8:126502200-126503000	Weak transcription	Adipose Nuclei	Adipose
9	chr8:126502200-126503400	Enhancers	HepG2	liver
10	chr8:126502200-126509800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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