Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12544593	0.82[ASN][1000 genomes]
rs12545963	0.85[ASN][1000 genomes]
rs12677676	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12679184	0.85[ASN][1000 genomes]
rs12679547	0.91[AMR][1000 genomes]
rs13258507	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs13265432	0.82[ASN][1000 genomes]
rs13271368	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17406109	0.82[ASN][1000 genomes]
rs34087092	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34417638	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs34604874	0.85[ASN][1000 genomes]
rs35309034	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4567057	0.85[ASN][1000 genomes]
rs4567059	0.85[ASN][1000 genomes]
rs4592055	0.85[ASN][1000 genomes]
rs4870942	0.85[EUR][1000 genomes]
rs55921265	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6989280	0.81[EUR][1000 genomes]
rs7828194	0.82[ASN][1000 genomes]
rs7828701	0.85[ASN][1000 genomes]
rs7846135	0.85[EUR][1000 genomes]
rs8180991	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891437	chr8:126470817-126629328	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126496600-126499400	Enhancers	Placenta	Placenta
2	chr8:126496600-126503000	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr8:126497200-126500600	Enhancers	Liver	Liver
4	chr8:126497200-126500800	Enhancers	HepG2	liver
5	chr8:126497200-126501800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr8:126497600-126499000	Enhancers	Primary B cells from cord blood	blood
7	chr8:126497600-126501600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr8:126497800-126501600	Weak transcription	NHEK	skin
9	chr8:126498600-126509200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr8:126498600-126509800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search: