Variant report

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:126506743..126511658-chr8:126513008..126519867,6	MCF-7	breast:
2	chr8:126442269..126445163-chr8:126508425..126512004,4	MCF-7	breast:
3	chr8:126506597..126510662-chr8:126558382..126560579,3	MCF-7	breast:
4	chr8:126487251..126488761-chr8:126508249..126510856,2	MCF-7	breast:
5	chr8:126507152..126508926-chr8:126605095..126607004,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TRIB1-7	chr8:126508717-126508890	NONHSAT128973

No data

Variant related genes	Relation type
ENSG00000173334	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10956250	0.87[ASN][1000 genomes]
rs12164213	0.80[CEU][hapmap];0.86[ASN][1000 genomes]
rs12677676	0.90[CEU][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes]
rs12681878	0.88[ASN][1000 genomes]
rs13271368	0.84[EUR][1000 genomes]
rs16900644	0.88[ASN][1000 genomes]
rs34087092	0.83[EUR][1000 genomes]
rs35192929	0.88[ASN][1000 genomes]
rs35309034	0.81[EUR][1000 genomes]
rs4350001	0.87[ASN][1000 genomes]
rs4552916	0.87[ASN][1000 genomes]
rs4870941	0.81[EUR][1000 genomes]
rs4870942	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55921265	0.82[EUR][1000 genomes]
rs6470358	0.88[ASN][1000 genomes]
rs6470359	0.84[ASN][1000 genomes]
rs6987702	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7005535	0.88[ASN][1000 genomes]
rs7846135	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8180991	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891437	chr8:126470817-126629328	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6989280	NSMCE2	cis	parietal	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126498600-126509200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:126498600-126509800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:126502200-126509800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr8:126504200-126511400	Weak transcription	Primary B cells from cord blood	blood
5	chr8:126505000-126511400	Weak transcription	Spleen	Spleen
6	chr8:126505800-126509200	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr8:126506800-126512800	Enhancers	Placenta	Placenta
8	chr8:126507600-126510000	Weak transcription	Lung	lung
9	chr8:126508000-126510200	Weak transcription	A549	lung
10	chr8:126508000-126510600	Weak transcription	Esophagus	oesophagus
11	chr8:126508200-126509400	Enhancers	Liver	Liver
12	chr8:126508200-126510800	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr8:126508400-126510400	Weak transcription	Adipose Nuclei	Adipose
14	chr8:126508600-126509000	Weak transcription	HepG2	liver
15	chr8:126508600-126509400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr8:126508600-126509400	Enhancers	Rectal Mucosa Donor 31	rectum

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