Variant report

Variant	rs13271368
Chromosome Location	chr8:126506140-126506141
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12545963	0.80[ASN][1000 genomes]
rs12677676	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12679184	0.80[ASN][1000 genomes]
rs12679547	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs13258507	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs34087092	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34417638	0.80[ASN][1000 genomes]
rs34604874	0.80[ASN][1000 genomes]
rs35309034	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4567057	0.80[ASN][1000 genomes]
rs4567059	0.80[ASN][1000 genomes]
rs4592055	0.80[ASN][1000 genomes]
rs4870941	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4870942	0.82[EUR][1000 genomes]
rs55921265	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6989280	0.84[EUR][1000 genomes]
rs7828701	0.80[ASN][1000 genomes]
rs7846135	0.84[EUR][1000 genomes]
rs8180991	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891437	chr8:126470817-126629328	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126498600-126509200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:126498600-126509800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:126502200-126509800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr8:126504200-126507000	Weak transcription	Adipose Nuclei	Adipose
5	chr8:126504200-126507000	Weak transcription	Liver	Liver
6	chr8:126504200-126507200	Weak transcription	HepG2	liver
7	chr8:126504200-126511400	Weak transcription	Primary B cells from cord blood	blood
8	chr8:126504400-126506800	Weak transcription	Placenta	Placenta
9	chr8:126505000-126511400	Weak transcription	Spleen	Spleen
10	chr8:126505800-126509200	Enhancers	Primary neutrophils fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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