Variant report

Variant	rs8180991
Chromosome Location	chr8:126500350-126500351
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10956249	0.89[CHB][hapmap];0.82[JPT][hapmap]
rs12544593	0.91[ASN][1000 genomes]
rs12545963	0.89[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs12677676	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12679184	0.94[ASN][1000 genomes]
rs12679189	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs12679547	0.84[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs13258507	0.85[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap];0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs13265432	0.89[CHB][hapmap];0.82[JPT][hapmap];0.91[ASN][1000 genomes]
rs13271368	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17406109	0.89[CHB][hapmap];0.83[CHD][hapmap];0.82[JPT][hapmap];0.91[MEX][hapmap];0.91[ASN][1000 genomes]
rs2003370	0.88[CHB][hapmap];0.91[JPT][hapmap]
rs34087092	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34417638	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs34604874	0.94[ASN][1000 genomes]
rs35309034	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4567057	0.89[CHB][hapmap];0.87[CHD][hapmap];0.91[JPT][hapmap];0.95[MEX][hapmap];0.94[ASN][1000 genomes]
rs4567059	0.89[CHB][hapmap];0.87[CHD][hapmap];0.91[JPT][hapmap];0.95[MEX][hapmap];0.94[ASN][1000 genomes]
rs4592055	1.00[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs4870941	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4870942	0.84[EUR][1000 genomes]
rs55921265	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6989280	0.90[CEU][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes]
rs7015677	0.89[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs7828194	0.91[ASN][1000 genomes]
rs7828701	0.89[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs7846135	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891437	chr8:126470817-126629328	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs8180991	FBXO32	cis	parietal	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126496600-126503000	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr8:126497200-126500600	Enhancers	Liver	Liver
3	chr8:126497200-126500800	Enhancers	HepG2	liver
4	chr8:126497200-126501800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr8:126497600-126501600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr8:126497800-126501600	Weak transcription	NHEK	skin
7	chr8:126498600-126509200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr8:126498600-126509800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr8:126499000-126503200	Weak transcription	Primary B cells from cord blood	blood
10	chr8:126499400-126503000	Weak transcription	Placenta	Placenta
11	chr8:126500200-126500400	Enhancers	Adipose Nuclei	Adipose
12	chr8:126500200-126500600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr8:126500200-126502000	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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