Variant report

Variant	rs12681878
Chromosome Location	chr8:126496925-126496926
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10956250	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12164213	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12679547	0.84[EUR][1000 genomes]
rs13258507	0.82[EUR][1000 genomes]
rs16900644	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35192929	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4350001	0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4552916	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4870942	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6470358	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6470359	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6987702	0.92[ASN][1000 genomes]
rs6989280	0.88[ASN][1000 genomes]
rs7005535	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7846135	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891437	chr8:126470817-126629328	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126483000-126498200	Weak transcription	Right Atrium	heart
2	chr8:126488000-126497200	Weak transcription	Liver	Liver
3	chr8:126493200-126497600	Weak transcription	Primary B cells from cord blood	blood
4	chr8:126496600-126497000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr8:126496600-126497000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr8:126496600-126497000	Enhancers	Hela-S3	cervix
7	chr8:126496600-126497000	Enhancers	NH-A	brain
8	chr8:126496600-126497200	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr8:126496600-126497600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr8:126496600-126497600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr8:126496600-126497600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr8:126496600-126497600	Enhancers	HMEC	breast
13	chr8:126496600-126497800	Enhancers	NHEK	skin
14	chr8:126496600-126499400	Enhancers	Placenta	Placenta
15	chr8:126496600-126503000	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr8:126496800-126497200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr8:126496800-126498200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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