Variant report

Variant	rs13273254
Chromosome Location	chr8:126457553-126457554
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:126457512..126459381-chr8:126460479..126462952,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10956249	0.90[CEU][hapmap]
rs12542915	1.00[ASW][hapmap]
rs12544955	0.83[EUR][1000 genomes]
rs12547199	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs12678799	0.89[EUR][1000 genomes]
rs12679189	0.89[CEU][hapmap];0.87[EUR][1000 genomes]
rs12679547	0.84[CEU][hapmap]
rs13258507	0.85[CEU][hapmap]
rs17320616	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17406109	0.86[MEX][hapmap];0.89[TSI][hapmap]
rs2003370	0.90[CEU][hapmap];0.83[GIH][hapmap];0.87[MEX][hapmap];0.94[TSI][hapmap];0.89[EUR][1000 genomes]
rs2003371	0.89[EUR][1000 genomes]
rs34321324	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34447699	0.82[EUR][1000 genomes]
rs34843049	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4567057	0.82[MEX][hapmap];0.89[TSI][hapmap]
rs4567059	1.00[ASW][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap]
rs4592055	0.86[CEU][hapmap]
rs6470355	0.95[CEU][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.89[JPT][hapmap];0.89[TSI][hapmap];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs68089270	0.89[EUR][1000 genomes]
rs6983834	0.89[EUR][1000 genomes]
rs71516786	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13273254	WDR67	cis	cerebellum	SCAN

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126447000-126458800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:126448600-126457800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:126448600-126458600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr8:126449000-126459000	Weak transcription	HSMM	muscle
5	chr8:126449400-126458600	Weak transcription	Esophagus	oesophagus
6	chr8:126450600-126457600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr8:126450600-126463800	Weak transcription	Hela-S3	cervix
8	chr8:126450800-126457600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr8:126450800-126457800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr8:126450800-126458000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr8:126450800-126458600	Weak transcription	Stomach Smooth Muscle	stomach
12	chr8:126450800-126458800	Weak transcription	Fetal Stomach	stomach
13	chr8:126451000-126457600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr8:126451000-126458400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr8:126451000-126462400	Weak transcription	Liver	Liver
16	chr8:126451200-126458200	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr8:126451600-126457600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr8:126452000-126457800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr8:126452200-126457800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr8:126452200-126457800	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr8:126452200-126457800	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr8:126452200-126457800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr8:126452200-126458400	Weak transcription	Right Atrium	heart
24	chr8:126452400-126458000	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr8:126452400-126458800	Weak transcription	Psoas Muscle	Psoas
26	chr8:126452400-126464400	Weak transcription	Spleen	Spleen
27	chr8:126452600-126459400	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr8:126452800-126457800	Weak transcription	Left Ventricle	heart
29	chr8:126452800-126462800	Weak transcription	A549	lung
30	chr8:126453000-126464000	Weak transcription	NHEK	skin
31	chr8:126453200-126457600	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr8:126453200-126458600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr8:126453200-126464000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr8:126453200-126464400	Weak transcription	Lung	lung
35	chr8:126453400-126458800	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr8:126454800-126458800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr8:126456400-126457600	Weak transcription	HepG2	liver
38	chr8:126456400-126458400	Weak transcription	Fetal Kidney	kidney
39	chr8:126456800-126459600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr8:126457000-126459000	Enhancers	K562	blood
41	chr8:126457000-126459600	Enhancers	Placenta	Placenta
42	chr8:126457000-126459800	Enhancers	Fetal Muscle Trunk	muscle
43	chr8:126457200-126458800	Enhancers	Skeletal Muscle Male	skeletal muscle
44	chr8:126457200-126459800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr8:126457200-126459800	Enhancers	Osteobl	bone
46	chr8:126457200-126460000	Enhancers	Fetal Muscle Leg	muscle
47	chr8:126457200-126460000	Enhancers	Right Ventricle	heart
48	chr8:126457200-126460000	Enhancers	HSMMtube	muscle
49	chr8:126457200-126460400	Enhancers	Fetal Heart	heart
50	chr8:126457200-126460600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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