Variant report

Variant	rs12545941
Chromosome Location	chr8:111931936-111931937
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:111929502..111932269-chr8:111933954..111936192,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10088693	0.91[ASN][1000 genomes]
rs10095358	0.82[ASN][1000 genomes]
rs10100737	0.82[ASN][1000 genomes]
rs10105281	0.96[ASN][1000 genomes]
rs10113434	0.96[ASN][1000 genomes]
rs10808439	0.82[ASN][1000 genomes]
rs10955547	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11774323	0.84[ASN][1000 genomes]
rs12541889	0.95[ASN][1000 genomes]
rs12548358	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12681712	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs13253221	0.81[ASN][1000 genomes]
rs13261074	0.84[ASN][1000 genomes]
rs13269197	0.95[ASN][1000 genomes]
rs1489364	0.82[AMR][1000 genomes]
rs1489368	0.84[ASN][1000 genomes]
rs1489372	0.81[ASN][1000 genomes]
rs16881248	0.84[ASN][1000 genomes]
rs16881360	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2130187	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2171707	0.90[ASN][1000 genomes]
rs28367343	0.95[ASN][1000 genomes]
rs28653273	0.81[ASN][1000 genomes]
rs35609046	0.89[ASN][1000 genomes]
rs4289849	0.93[ASN][1000 genomes]
rs4464997	0.84[ASN][1000 genomes]
rs4876328	0.95[ASN][1000 genomes]
rs4876347	0.89[ASN][1000 genomes]
rs61224411	0.92[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6469327	0.81[ASN][1000 genomes]
rs6469330	0.91[ASN][1000 genomes]
rs6469331	0.92[ASN][1000 genomes]
rs6985111	0.89[ASN][1000 genomes]
rs72677153	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs72677194	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7819770	0.94[ASN][1000 genomes]
rs923433	0.81[ASN][1000 genomes]
rs931410	0.91[ASN][1000 genomes]
rs958443	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891294	chr8:111754075-112163801	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1032766	chr8:111779352-111995438	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1030494	chr8:111779352-112421812	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	esv2754849	chr8:111817591-112088992	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	esv3418448	chr8:111834718-112112905	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv891295	chr8:111852200-112163801	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:111929600-111942400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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