Variant report

Variant	rs72677153
Chromosome Location	chr8:111909207-111909208
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10088693	0.97[ASN][1000 genomes]
rs10100947	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs10105281	0.92[ASN][1000 genomes]
rs10111772	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs10113434	0.91[ASN][1000 genomes]
rs10808439	0.88[ASN][1000 genomes]
rs10955547	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11774323	0.89[ASN][1000 genomes]
rs11990571	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12541889	0.91[ASN][1000 genomes]
rs12545941	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12548358	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12681712	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13261074	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13269197	0.91[ASN][1000 genomes]
rs1489364	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1489365	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1489368	0.90[ASN][1000 genomes]
rs1489372	0.86[ASN][1000 genomes]
rs1602042	0.80[ASN][1000 genomes]
rs16881248	0.90[ASN][1000 genomes]
rs16881360	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1826046	0.80[ASN][1000 genomes]
rs2087421	0.80[ASN][1000 genomes]
rs2130187	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2171707	0.96[ASN][1000 genomes]
rs2351325	0.80[ASN][1000 genomes]
rs28367343	0.91[ASN][1000 genomes]
rs28653273	0.86[ASN][1000 genomes]
rs35609046	0.85[ASN][1000 genomes]
rs4289849	0.89[ASN][1000 genomes]
rs4357259	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4360267	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs4464997	0.81[ASN][1000 genomes]
rs4510831	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs4573245	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4613971	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs4876328	0.91[ASN][1000 genomes]
rs4876347	0.85[ASN][1000 genomes]
rs56122240	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61224411	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6469327	0.86[ASN][1000 genomes]
rs6469330	0.97[ASN][1000 genomes]
rs6469331	0.96[ASN][1000 genomes]
rs6985111	0.95[ASN][1000 genomes]
rs6991190	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6991689	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs6993743	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs72677194	0.82[ASN][1000 genomes]
rs7819770	0.90[ASN][1000 genomes]
rs7839628	0.82[AMR][1000 genomes]
rs923433	0.86[ASN][1000 genomes]
rs931410	0.97[ASN][1000 genomes]
rs958443	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891294	chr8:111754075-112163801	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1032766	chr8:111779352-111995438	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1030494	chr8:111779352-112421812	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	esv2754849	chr8:111817591-112088992	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	esv3418448	chr8:111834718-112112905	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv891295	chr8:111852200-112163801	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	esv3372961	chr8:111883825-111909491	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:111907600-111909800	Weak transcription	Muscle Satellite Cultured Cells	--

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