Variant report

Variant	rs10111772
Chromosome Location	chr8:111772956-111772957
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:111770515..111773370-chr8:111778420..111781176,2	K562	blood:

Variant related genes	Relation type
ENSG00000253717	Chromatin interaction

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10087692	0.85[ASN][1000 genomes]
rs10100947	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10103670	0.86[ASN][1000 genomes]
rs10104666	0.84[ASN][1000 genomes]
rs10105924	0.82[ASN][1000 genomes]
rs10107288	0.87[ASN][1000 genomes]
rs10107334	0.81[ASN][1000 genomes]
rs10109131	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10112109	0.86[ASN][1000 genomes]
rs10481058	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10481059	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10481111	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10955543	0.86[ASN][1000 genomes]
rs10955547	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11776494	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11781088	0.85[ASN][1000 genomes]
rs11782827	0.86[ASN][1000 genomes]
rs11990571	0.82[ASN][1000 genomes]
rs11994590	0.81[ASN][1000 genomes]
rs11995209	0.87[ASN][1000 genomes]
rs12548358	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12677234	1.00[YRI][hapmap]
rs12681712	0.85[AMR][1000 genomes]
rs13258383	0.86[ASN][1000 genomes]
rs13258611	0.89[ASN][1000 genomes]
rs1489356	0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs1489364	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1489365	0.81[ASN][1000 genomes]
rs1494240	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16881031	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16881360	0.86[AFR][1000 genomes]
rs2055108	0.86[ASN][1000 genomes]
rs2130187	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2131847	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2220822	0.87[ASN][1000 genomes]
rs2220823	0.86[ASN][1000 genomes]
rs2351320	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28452907	0.85[ASN][1000 genomes]
rs36055723	0.85[ASN][1000 genomes]
rs4357259	0.82[ASN][1000 genomes]
rs4360267	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4430061	0.81[ASN][1000 genomes]
rs4469430	0.96[ASN][1000 genomes]
rs4510831	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4529438	0.89[ASN][1000 genomes]
rs4541876	0.97[ASN][1000 genomes]
rs4573245	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4613971	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4735161	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4735162	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56122240	0.81[ASN][1000 genomes]
rs6469322	0.81[ASN][1000 genomes]
rs6981969	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6991689	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6993743	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7010569	0.86[ASN][1000 genomes]
rs72677153	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7461078	0.86[ASN][1000 genomes]
rs7839628	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7840844	0.87[ASN][1000 genomes]
rs937278	0.86[ASN][1000 genomes]
rs937279	0.86[ASN][1000 genomes]
rs958443	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027659	chr8:111585843-111875753	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1025390	chr8:111605571-111806020	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv539718	chr8:111605571-111806020	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv831423	chr8:111672801-111869818	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv891293	chr8:111704563-111822043	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
6	nsv1031245	chr8:111716585-111875753	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv891294	chr8:111754075-112163801	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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