Variant report

Variant	rs4735162
Chromosome Location	chr8:111790740-111790741
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:111781609..111784016-chr8:111789603..111791637,2	MCF-7	breast:

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10087692	0.93[ASN][1000 genomes]
rs10100947	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10105924	0.91[ASN][1000 genomes]
rs10107334	0.89[ASN][1000 genomes]
rs10109131	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10111631	0.88[ASN][1000 genomes]
rs10111772	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10481058	0.82[EUR][1000 genomes]
rs10481059	0.88[EUR][1000 genomes]
rs10481111	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10955547	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11774323	0.82[ASN][1000 genomes]
rs11776494	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11781088	0.93[ASN][1000 genomes]
rs11990571	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11994590	0.89[ASN][1000 genomes]
rs12548358	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12681712	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13258383	0.94[ASN][1000 genomes]
rs13258611	0.98[ASN][1000 genomes]
rs13261074	0.82[ASN][1000 genomes]
rs1352549	0.88[ASN][1000 genomes]
rs1387410	0.88[ASN][1000 genomes]
rs1489356	0.88[ASN][1000 genomes]
rs1489364	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1489365	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1489368	0.82[ASN][1000 genomes]
rs1494240	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1602042	0.87[ASN][1000 genomes]
rs16881031	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16881248	0.82[ASN][1000 genomes]
rs1826046	0.87[ASN][1000 genomes]
rs2087421	0.87[ASN][1000 genomes]
rs2130187	0.80[ASN][1000 genomes]
rs2131847	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2351320	0.89[EUR][1000 genomes]
rs2351325	0.87[ASN][1000 genomes]
rs28452907	0.93[ASN][1000 genomes]
rs36055723	0.93[ASN][1000 genomes]
rs4357259	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4360267	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4430061	0.89[ASN][1000 genomes]
rs4469430	0.88[ASN][1000 genomes]
rs4510831	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4529438	0.98[ASN][1000 genomes]
rs4541876	0.88[ASN][1000 genomes]
rs4573245	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4613971	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4735161	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56122240	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6469322	0.89[ASN][1000 genomes]
rs6981969	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6991190	0.88[ASN][1000 genomes]
rs6991689	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6993743	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7010569	0.95[ASN][1000 genomes]
rs7015288	0.87[ASN][1000 genomes]
rs7461078	0.95[ASN][1000 genomes]
rs7839628	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs923429	0.88[ASN][1000 genomes]
rs958443	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027659	chr8:111585843-111875753	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1025390	chr8:111605571-111806020	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv539718	chr8:111605571-111806020	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv831423	chr8:111672801-111869818	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv891293	chr8:111704563-111822043	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
6	nsv1031245	chr8:111716585-111875753	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv891294	chr8:111754075-112163801	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv1032766	chr8:111779352-111995438	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv1030494	chr8:111779352-112421812	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
10	nsv972596	chr8:111788240-111793793	Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:111788600-111826200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links