Variant report

Variant	rs7839628
Chromosome Location	chr8:111803458-111803459
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10087692	0.96[ASN][1000 genomes]
rs10100947	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10105924	0.93[ASN][1000 genomes]
rs10107334	0.92[ASN][1000 genomes]
rs10109131	0.89[EUR][1000 genomes]
rs10111631	0.91[ASN][1000 genomes]
rs10111772	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10481058	0.82[EUR][1000 genomes]
rs10481059	0.88[EUR][1000 genomes]
rs10481111	0.89[EUR][1000 genomes]
rs10808439	0.82[ASN][1000 genomes]
rs10955547	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11774323	0.85[ASN][1000 genomes]
rs11776494	0.90[EUR][1000 genomes]
rs11781088	0.96[ASN][1000 genomes]
rs11990571	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11994590	0.92[ASN][1000 genomes]
rs12548358	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12681712	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs13258383	0.97[ASN][1000 genomes]
rs13258611	0.95[ASN][1000 genomes]
rs13261074	0.84[ASN][1000 genomes]
rs1352549	0.91[ASN][1000 genomes]
rs1387410	0.91[ASN][1000 genomes]
rs1489356	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1489364	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1489365	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1489368	0.84[ASN][1000 genomes]
rs1489372	0.81[ASN][1000 genomes]
rs1494240	0.88[EUR][1000 genomes]
rs1602042	0.90[ASN][1000 genomes]
rs16881031	0.90[EUR][1000 genomes]
rs16881248	0.84[ASN][1000 genomes]
rs1826046	0.90[ASN][1000 genomes]
rs2087421	0.90[ASN][1000 genomes]
rs2130187	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2131847	0.89[EUR][1000 genomes]
rs2351320	0.89[EUR][1000 genomes]
rs2351325	0.90[ASN][1000 genomes]
rs28452907	0.96[ASN][1000 genomes]
rs28653273	0.81[ASN][1000 genomes]
rs36055723	0.96[ASN][1000 genomes]
rs4275204	0.82[AMR][1000 genomes]
rs4357259	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4360267	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4430061	0.92[ASN][1000 genomes]
rs4469430	0.88[ASN][1000 genomes]
rs4510831	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4529438	0.95[ASN][1000 genomes]
rs4541876	0.86[ASN][1000 genomes]
rs4573245	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4613971	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4735161	0.89[EUR][1000 genomes]
rs4735162	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56122240	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6469322	0.92[ASN][1000 genomes]
rs6469327	0.81[ASN][1000 genomes]
rs6981969	0.89[EUR][1000 genomes]
rs6991190	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6991689	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6993743	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7010569	0.98[ASN][1000 genomes]
rs7015288	0.90[ASN][1000 genomes]
rs72677153	0.82[AMR][1000 genomes]
rs7461078	0.98[ASN][1000 genomes]
rs923429	0.91[ASN][1000 genomes]
rs923433	0.81[ASN][1000 genomes]
rs958443	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027659	chr8:111585843-111875753	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1025390	chr8:111605571-111806020	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv539718	chr8:111605571-111806020	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv831423	chr8:111672801-111869818	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv891293	chr8:111704563-111822043	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
6	nsv1031245	chr8:111716585-111875753	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv891294	chr8:111754075-112163801	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv1032766	chr8:111779352-111995438	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv1030494	chr8:111779352-112421812	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
10	esv3446819	chr8:111792825-111817060	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
11	nsv968538	chr8:111793793-111813462	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:111788600-111826200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:111803200-111804000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr8:111803200-111804400	Enhancers	Fetal Intestine Large	intestine
4	chr8:111803400-111804200	Enhancers	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links