Variant report

Variant	rs4289849
Chromosome Location	chr8:111952230-111952231
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10088693	0.92[ASN][1000 genomes]
rs10095358	0.83[ASN][1000 genomes]
rs10100737	0.83[ASN][1000 genomes]
rs10105281	0.97[ASN][1000 genomes]
rs10111772	0.81[CEU][hapmap];0.82[CHB][hapmap];0.88[JPT][hapmap]
rs10113434	0.96[ASN][1000 genomes]
rs10808439	0.82[ASN][1000 genomes]
rs12541889	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12545941	0.93[ASN][1000 genomes]
rs13253221	0.82[ASN][1000 genomes]
rs13269197	0.96[ASN][1000 genomes]
rs1352549	0.81[AMR][1000 genomes]
rs1489356	0.86[CHB][hapmap];0.91[CHD][hapmap];0.89[JPT][hapmap]
rs1489372	0.80[ASN][1000 genomes]
rs16881360	0.93[ASN][1000 genomes]
rs2171707	0.91[ASN][1000 genomes]
rs2351325	0.81[AMR][1000 genomes]
rs28367343	0.96[ASN][1000 genomes]
rs28653273	0.80[ASN][1000 genomes]
rs35609046	0.90[ASN][1000 genomes]
rs4573245	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs4876328	0.96[ASN][1000 genomes]
rs4876347	0.90[ASN][1000 genomes]
rs61224411	0.93[ASN][1000 genomes]
rs6469327	0.80[ASN][1000 genomes]
rs6469330	0.92[ASN][1000 genomes]
rs6469331	0.93[ASN][1000 genomes]
rs6985111	0.90[ASN][1000 genomes]
rs72677153	0.89[ASN][1000 genomes]
rs72677194	0.82[ASN][1000 genomes]
rs7819770	0.95[ASN][1000 genomes]
rs923433	0.80[ASN][1000 genomes]
rs931410	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891294	chr8:111754075-112163801	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1032766	chr8:111779352-111995438	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1030494	chr8:111779352-112421812	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	esv2754849	chr8:111817591-112088992	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	esv3418448	chr8:111834718-112112905	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv891295	chr8:111852200-112163801	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv1028079	chr8:111939568-112098196	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv891296	chr8:111952230-112191432	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:111951000-111953000	Weak transcription	Brain Hippocampus Middle	brain

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