Variant report

Variant	rs1254960
Chromosome Location	chr10:43699657-43699658
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF143	chr10:43699103-43699724	H1-hESC	embryonic stem cell:	n/a	chr10:43699273-43699291
2	CTCF	chr10:43699397-43699762	K562	blood:	n/a	chr10:43699587-43699600
3	CTCF	chr10:43699506-43699711	H1-hESC	embryonic stem cell:	n/a	chr10:43699587-43699600
4	CTCF	chr10:43699620-43699770	GM12864	blood:	n/a	n/a
5	MAX	chr10:43699358-43699745	K562	blood:	n/a	chr10:43699657-43699666 chr10:43699657-43699666 chr10:43699500-43699507 chr10:43699657-43699666 chr10:43699657-43699667 chr10:43699655-43699664
6	CTCF	chr10:43699394-43699772	H1-hESC	embryonic stem cell:	n/a	chr10:43699587-43699600
7	CTCF	chr10:43699520-43699670	HUVEC	blood vessel:	n/a	chr10:43699587-43699600
8	MAX	chr10:43697592-43699700	K562	blood:	n/a	chr10:43699657-43699666 chr10:43698135-43698144 chr10:43699657-43699666 chr10:43699500-43699507 chr10:43699657-43699666 chr10:43699274-43699284 chr10:43699657-43699667 chr10:43699655-43699664
9	CTCF	chr10:43699580-43699730	K562	blood:	n/a	chr10:43699587-43699600
10	CTCF	chr10:43699540-43699690	A549	lung:	n/a	chr10:43699587-43699600
11	CTCF	chr10:43699582-43699691	GM10266	blood:	n/a	chr10:43699587-43699600
12	CTCF	chr10:43699560-43699710	GM12871	blood:	n/a	chr10:43699587-43699600
13	USF1	chr10:43699437-43699823	K562	blood:	n/a	chr10:43699656-43699667
14	CTCF	chr10:43699520-43699670	HL-60	blood:	n/a	chr10:43699587-43699600
15	TBP	chr10:43699569-43699783	H1-hESC	embryonic stem cell:	n/a	n/a
16	BACH1	chr10:43699552-43699682	H1-hESC	embryonic stem cell:	n/a	n/a
17	CTCF	chr10:43699560-43699710	HepG2	liver:	n/a	chr10:43699587-43699600
18	CTCF	chr10:43699560-43699710	WERI-Rb-1	eye:	n/a	chr10:43699587-43699600
19	MAX	chr10:43697624-43700114	K562	blood:	n/a	chr10:43699657-43699666 chr10:43698135-43698144 chr10:43699657-43699666 chr10:43699500-43699507 chr10:43699657-43699666 chr10:43699274-43699284 chr10:43699657-43699667 chr10:43699655-43699664
20	CTCF	chr10:43699552-43699675	GM12891	blood:	n/a	chr10:43699587-43699600
21	CTCF	chr10:43699520-43699670	HBMEC	blood vessel:	n/a	chr10:43699587-43699600
22	USF2	chr10:43699502-43699693	H1-hESC	embryonic stem cell:	n/a	n/a
23	CTCF	chr10:43699600-43699750	GM12872	blood:	n/a	n/a
24	CTCF	chr10:43699521-43699691	HepG2	liver:	n/a	chr10:43699587-43699600
25	MYC	chr10:43697676-43699784	K562	blood:	n/a	chr10:43699657-43699666 chr10:43698135-43698144 chr10:43699657-43699666 chr10:43699500-43699507 chr10:43699657-43699666 chr10:43699274-43699284 chr10:43699657-43699667 chr10:43699655-43699664
26	CTCF	chr10:43699540-43699690	HCFaa	heart:	n/a	chr10:43699587-43699600
27	MAX	chr10:43698969-43699845	H1-hESC	embryonic stem cell:	n/a	chr10:43699657-43699666 chr10:43699657-43699666 chr10:43699500-43699507 chr10:43699657-43699666 chr10:43699274-43699284 chr10:43699657-43699667 chr10:43699655-43699664
28	CTCF	chr10:43699520-43699670	HPF	lung:	n/a	chr10:43699587-43699600
29	MXI1	chr10:43699605-43699795	H1-hESC	embryonic stem cell:	n/a	chr10:43699658-43699667 chr10:43699656-43699665
30	CTCF	chr10:43699520-43699670	HCT-116	colon:	n/a	chr10:43699587-43699600
31	TBL1XR1	chr10:43699434-43699663	K562	blood:	n/a	n/a
32	CTCF	chr10:43699496-43699677	GM12878	blood:	n/a	chr10:43699587-43699600
33	CTCF	chr10:43699560-43699710	HMEC	breast:	n/a	chr10:43699587-43699600
34	RAD21	chr10:43699493-43699696	K562	blood:	n/a	chr10:43699662-43699676
35	CTCF	chr10:43699600-43699750	SAEC	small airway:	n/a	n/a
36	CTCF	chr10:43699540-43699690	HCT-116	colon:	n/a	chr10:43699587-43699600
37	ZBTB7A	chr10:43697625-43699717	K562	blood:	n/a	chr10:43699426-43699434 chr10:43697980-43697989
38	CTCF	chr10:43699566-43699693	GM13977	blood:	n/a	chr10:43699587-43699600
39	CTCF	chr10:43699567-43699660	MCF-7	breast:	n/a	chr10:43699587-43699600
40	MAZ	chr10:43697573-43699701	K562	blood:	n/a	chr10:43699657-43699666 chr10:43698135-43698144 chr10:43699657-43699666 chr10:43699500-43699507 chr10:43699657-43699666 chr10:43699274-43699284 chr10:43699657-43699667 chr10:43699655-43699664
41	CTCF	chr10:43699520-43699670	GM12874	blood:	n/a	chr10:43699587-43699600
42	ZNF143	chr10:43699073-43699690	K562	blood:	n/a	chr10:43699273-43699291
43	USF1	chr10:43699560-43699705	HepG2	liver:	n/a	chr10:43699656-43699667
44	CTCF	chr10:43699520-43699670	HRPEpiC	eye:	n/a	chr10:43699587-43699600
45	CTCF	chr10:43699214-43699804	K562	blood:	n/a	chr10:43699587-43699600
46	CTCF	chr10:43699587-43699671	GM10248	blood:	n/a	chr10:43699587-43699600
47	CTCF	chr10:43699520-43699670	HCPEpiC	choroid plexus:	n/a	chr10:43699587-43699600
48	HMGN3	chr10:43697654-43699668	K562	blood:	n/a	n/a
49	MYC	chr10:43697598-43699770	K562	blood:	n/a	chr10:43699657-43699666 chr10:43698135-43698144 chr10:43699657-43699666 chr10:43699500-43699507 chr10:43699657-43699666 chr10:43699274-43699284 chr10:43699657-43699667 chr10:43699655-43699664
50	CTCF	chr10:43699580-43699730	AG09319	gingival:	n/a	chr10:43699587-43699600

No.	Distal block	Cell Line	Cell type
1	chr10:43698957..43702295-chr10:43702554..43706038,5	K562	blood:
2	chr10:43696369..43700743-chr10:43891529..43894634,3	K562	blood:
3	chr10:43696835..43700131-chr10:43902185..43905182,4	K562	blood:
4	chr10:43632409..43636039-chr10:43698014..43700588,4	K562	blood:
5	chr10:43699342..43701842-chr10:43722370..43724384,2	K562	blood:
6	chr10:43632694..43635237-chr10:43697053..43700182,3	MCF-7	breast:
7	chr10:43632409..43636039-chr10:43698014..43700588,6	K562	blood:
8	chr10:43698632..43700457-chr10:43704012..43705797,2	K562	blood:
9	chr10:43697420..43700683-chr10:43890424..43894292,4	K562	blood:

Variant related genes	Relation type
RASGEF1A	TF binding region
ENSG00000169813	Chromatin interaction
ENSG00000273008	Chromatin interaction
ENSG00000198915	Chromatin interaction
ENSG00000169826	Chromatin interaction

Extended variants
information (count: 103 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs1059484	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10793424	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10793426	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10793427	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10899778	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10899779	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10899780	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10899781	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10899782	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10899786	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10899787	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11238476	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11238479	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11238481	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11238483	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11238485	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11238490	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11528481	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12220534	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12220560	0.94[EUR][1000 genomes]
rs12268309	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12356643	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12360493	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12416428	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1254958	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1254959	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1254962	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1254963	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1254965	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1254967	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1254968	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1270015	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1317214	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1800861	0.86[ASN][1000 genomes]
rs1864399	0.81[ASN][1000 genomes]
rs1864400	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1879310	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1915142	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2003317	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2075910	0.86[ASN][1000 genomes]
rs2075912	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2115817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2249005	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2257767	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2293020	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2435337	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2435338	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2435339	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2435354	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2435376	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2435377	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2435383	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2435384	1.00[ASN][1000 genomes]
rs2435385	1.00[ASN][1000 genomes]
rs2503848	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2503849	1.00[ASN][1000 genomes]
rs2503853	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2503860	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2503863	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2503864	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2503881	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2505506	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2505511	0.94[ASN][1000 genomes]
rs2505512	0.84[ASN][1000 genomes]
rs2505514	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2505553	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2505557	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2565200	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2565201	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2742233	0.86[ASN][1000 genomes]
rs2742234	0.86[ASN][1000 genomes]
rs2742235	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2742237	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2742239	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2742240	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2742241	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3004214	0.91[ASN][1000 genomes]
rs4648313	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60845448	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61268333	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61845684	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7073849	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7093409	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7096500	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7098236	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7098237	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs715106	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs741968	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs871763	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534548	chr10:42890664-43729688	Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv430159	chr10:43291894-43946294	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
3	nsv895082	chr10:43530071-43755506	Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv895083	chr10:43549708-43765485	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	nsv916378	chr10:43622151-43868356	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	nsv1043661	chr10:43626619-43890162	Bivalent Enhancer Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
7	nsv540574	chr10:43626619-43890162	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
8	esv1831010	chr10:43674916-43759185	Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
9	nsv895084	chr10:43688505-43765485	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv466881	chr10:43695049-43799588	Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv550696	chr10:43695049-43799588	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv895085	chr10:43695049-43804617	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	esv3402305	chr10:43697246-43699869	Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs1254960	CSGALNACT2	cis	Artery Tibial	GTEx
rs1254960	CSGALNACT2	cis	lung	GTEx
rs1254960	CSGALNACT2	cis	Nerve Tibial	GTEx
rs1254960	CSGALNACT2	cis	Thyroid	GTEx
rs1254960	CSGALNACT2	cis	Heart Left Ventricle	GTEx
rs1254960	CSGALNACT2	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43675600-43700600	Weak transcription	A549	lung
2	chr10:43698000-43699800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:43698000-43700000	Enhancers	Lung	lung
4	chr10:43698000-43700200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr10:43698000-43700400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr10:43698000-43700400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr10:43698000-43700600	Weak transcription	Brain Angular Gyrus	brain
8	chr10:43698000-43722800	Weak transcription	Gastric	stomach
9	chr10:43698200-43700200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr10:43698200-43700400	Weak transcription	Brain Anterior Caudate	brain
11	chr10:43698200-43700600	Weak transcription	Primary hematopoietic stem cells	blood
12	chr10:43698200-43700600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr10:43698200-43706600	Weak transcription	Brain Hippocampus Middle	brain
14	chr10:43698200-43707400	Weak transcription	Brain Substantia Nigra	brain
15	chr10:43698400-43700200	Weak transcription	Stomach Mucosa	stomach
16	chr10:43698400-43700400	Weak transcription	Brain Cingulate Gyrus	brain
17	chr10:43698400-43700400	Weak transcription	Fetal Brain Female	brain
18	chr10:43698400-43700600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr10:43698400-43700600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr10:43698400-43700800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr10:43698400-43701200	Weak transcription	Brain Germinal Matrix	brain
22	chr10:43698400-43701400	Enhancers	Primary T cells fromperipheralblood	blood
23	chr10:43698400-43706200	Weak transcription	HMEC	breast
24	chr10:43698400-43710800	Weak transcription	Esophagus	oesophagus
25	chr10:43698600-43700600	Enhancers	Spleen	Spleen
26	chr10:43699000-43700400	Weak transcription	Thymus	Thymus
27	chr10:43699000-43700600	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr10:43699200-43700200	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr10:43699200-43700200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr10:43699200-43700400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr10:43699200-43700400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr10:43699200-43700400	Weak transcription	Pancreas	Pancrea
33	chr10:43699200-43700600	Weak transcription	Right Ventricle	heart
34	chr10:43699200-43704200	Weak transcription	Fetal Thymus	thymus
35	chr10:43699400-43699800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr10:43699400-43699800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr10:43699400-43700200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr10:43699400-43700400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr10:43699400-43700400	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr10:43699400-43700800	Enhancers	ES-I3 Cell Line	embryonic stem cell
41	chr10:43699400-43700800	Enhancers	H1 Cell Line	embryonic stem cell
42	chr10:43699400-43700800	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr10:43699400-43700800	Enhancers	iPS-15b Cell Line	embryonic stem cell
44	chr10:43699400-43701000	Enhancers	K562	blood
45	chr10:43699400-43701200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
46	chr10:43699400-43703200	Enhancers	Placenta	Placenta
47	chr10:43699400-43716800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
48	chr10:43699400-43724600	Weak transcription	Right Atrium	heart
49	chr10:43699600-43700000	Weak transcription	Primary B cells from peripheral blood	blood

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