Variant report

No.	Distal block	Cell Line	Cell type
1	chr9:92843844..92846787-chr9:92857417..92859315,2	MCF-7	breast:
2	chr9:92221881..92224569-chr9:92856789..92859369,3	MCF-7	breast:
3	chr9:92857591..92859341-chr9:92860040..92862686,2	MCF-7	breast:
4	chr9:92219124..92221595-chr9:92854778..92859945,4	MCF-7	breast:
5	chr9:92219255..92222737-chr9:92856647..92859942,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000130222	Chromatin interaction
ENSG00000234910	Chromatin interaction

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10122998	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992049	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11790815	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11792422	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12345484	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12346907	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12552603	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12553616	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1329046	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16906191	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28718362	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs423239	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7048555	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73651746	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73651747	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482303	chr9:92752928-92890226	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv614852	chr9:92786722-93100550	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv893563	chr9:92816727-92967125	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92848400-92858000	Weak transcription	Right Atrium	heart
2	chr9:92848800-92857800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:92848800-92862200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr9:92855000-92858000	Enhancers	Fetal Muscle Leg	muscle
5	chr9:92855400-92857800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr9:92855400-92857800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr9:92855600-92857800	Weak transcription	Pancreas	Pancrea
8	chr9:92855600-92864400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr9:92856400-92857800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr9:92857000-92860400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
11	chr9:92857000-92861600	Enhancers	Fetal Brain Female	brain
12	chr9:92857000-92862400	Enhancers	Fetal Brain Male	brain
13	chr9:92857400-92859000	Enhancers	HSMMtube	muscle
14	chr9:92857600-92858000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr9:92857600-92858400	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr9:92857600-92858600	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr9:92857600-92858600	Enhancers	Fetal Intestine Small	intestine
18	chr9:92857600-92858600	Enhancers	HSMM	muscle
19	chr9:92857600-92858800	Enhancers	Fetal Intestine Large	intestine
20	chr9:92857600-92858800	Enhancers	Stomach Mucosa	stomach
21	chr9:92857600-92859200	Bivalent Enhancer	Fetal Thymus	thymus

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