Variant report

Variant	rs1329046
Chromosome Location	chr9:92865328-92865329
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:92218658..92223647-chr9:92860097..92866006,11	MCF-7	breast:
2	chr9:92218709..92223183-chr9:92862729..92866537,7	MCF-7	breast:
3	chr9:92218017..92218812-chr9:92864241..92865418,4	K562	blood:
4	chr9:92207554..92215968-chr9:92858794..92866301,17	MCF-7	breast:

Variant related genes	Relation type
ENSG00000130222	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10122998	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10992049	0.85[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11790815	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11792422	0.90[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12345484	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12346907	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12552603	0.92[CEU][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12553616	0.92[CEU][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12553823	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16906191	0.92[CEU][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28718362	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs423239	0.85[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7048555	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73651746	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73651747	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482303	chr9:92752928-92890226	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv614852	chr9:92786722-93100550	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv893563	chr9:92816727-92967125	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92858600-92870200	Weak transcription	Right Atrium	heart
2	chr9:92860000-92867600	Weak transcription	Psoas Muscle	Psoas
3	chr9:92860000-92868400	Weak transcription	Liver	Liver
4	chr9:92860800-92870200	Weak transcription	Right Ventricle	heart
5	chr9:92861600-92868400	Weak transcription	HSMMtube	muscle
6	chr9:92861800-92866200	Weak transcription	Fetal Kidney	kidney
7	chr9:92861800-92869200	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr9:92861800-92870200	Weak transcription	Pancreas	Pancrea
9	chr9:92862800-92866000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr9:92862800-92869200	Weak transcription	HSMM	muscle
11	chr9:92862800-92869400	Weak transcription	Brain Germinal Matrix	brain
12	chr9:92863000-92869200	Weak transcription	Rectal Smooth Muscle	rectum
13	chr9:92864400-92866800	Enhancers	Primary T cells from cord blood	blood
14	chr9:92864600-92870200	Weak transcription	Fetal Stomach	stomach
15	chr9:92864800-92866000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr9:92864800-92869000	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr9:92864800-92869400	Weak transcription	Fetal Lung	lung
18	chr9:92864800-92870400	Weak transcription	Stomach Smooth Muscle	stomach
19	chr9:92865000-92865400	Weak transcription	Left Ventricle	heart
20	chr9:92865000-92866200	Weak transcription	Fetal Intestine Large	intestine
21	chr9:92865000-92866600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr9:92865000-92867400	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr9:92865000-92869200	Weak transcription	Stomach Mucosa	stomach
24	chr9:92865200-92866000	Weak transcription	Fetal Muscle Leg	muscle
25	chr9:92865200-92866600	Weak transcription	Fetal Muscle Trunk	muscle
26	chr9:92865200-92869000	Weak transcription	Primary B cells from cord blood	blood

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