Variant report

Variant	rs7048555
Chromosome Location	chr9:92861581-92861582
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:92218658..92223647-chr9:92860097..92866006,11	MCF-7	breast:
2	chr9:92218170..92219779-chr9:92860689..92862604,2	MCF-7	breast:
3	chr9:92217628..92218654-chr9:92861302..92862433,8	MCF-7	breast:
4	chr9:92217541..92219304-chr9:92861323..92862818,15	MCF-7	breast:
5	chr9:92213022..92213731-chr9:92861384..92862297,6	MCF-7	breast:
6	chr9:92740215..92741137-chr9:92861382..92862059,2	MCF-7	breast:
7	chr9:92857591..92859341-chr9:92860040..92862686,2	MCF-7	breast:
8	chr9:92212338..92213668-chr9:92861349..92862183,3	MCF-7	breast:
9	chr9:92207554..92215968-chr9:92858794..92866301,17	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000130222	Chromatin interaction
ENSG00000237626	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10122998	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992049	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11790815	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11792422	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12345484	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12346907	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12552603	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12553616	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12553823	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1329046	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16906191	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28718362	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs423239	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73651746	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73651747	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482303	chr9:92752928-92890226	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv614852	chr9:92786722-93100550	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv893563	chr9:92816727-92967125	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3380801	chr9:92859132-92863030	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	n/a
5	esv3341727	chr9:92859682-92862480	Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
6	esv3382751	chr9:92859832-92863030	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92848800-92862200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:92855600-92864400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr9:92857000-92861600	Enhancers	Fetal Brain Female	brain
4	chr9:92857000-92862400	Enhancers	Fetal Brain Male	brain
5	chr9:92857800-92862800	Enhancers	Brain Germinal Matrix	brain
6	chr9:92857800-92862800	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr9:92858400-92861600	Weak transcription	Pancreas	Pancrea
8	chr9:92858600-92870200	Weak transcription	Right Atrium	heart
9	chr9:92858800-92864400	Weak transcription	Fetal Intestine Large	intestine
10	chr9:92860000-92867600	Weak transcription	Psoas Muscle	Psoas
11	chr9:92860000-92868400	Weak transcription	Liver	Liver
12	chr9:92860400-92864800	Weak transcription	Left Ventricle	heart
13	chr9:92860800-92861800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr9:92860800-92870200	Weak transcription	Right Ventricle	heart
15	chr9:92861000-92861600	Active TSS	Fetal Lung	lung
16	chr9:92861000-92861800	Enhancers	Pancreatic Islets	Pancreatic Islet
17	chr9:92861000-92862800	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr9:92861200-92861600	Active TSS	Spleen	Spleen
19	chr9:92861200-92861600	Enhancers	HSMMtube	muscle
20	chr9:92861200-92861800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr9:92861200-92862400	Enhancers	Ovary	ovary
22	chr9:92861200-92862800	Enhancers	HSMM	muscle
23	chr9:92861400-92861800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr9:92861400-92862000	Enhancers	Rectal Smooth Muscle	rectum

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