Variant report

Variant	rs12553971
Chromosome Location	chr9:110669366-110669367
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10733564	1.00[AFR][1000 genomes]
rs13292389	1.00[AFR][1000 genomes]
rs34341845	1.00[AFR][1000 genomes]
rs6477596	1.00[AFR][1000 genomes]
rs7865094	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051101	chr9:110548257-110697253	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv893701	chr9:110650482-110709587	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110661600-110670000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr9:110666800-110669800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr9:110666800-110670000	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr9:110666800-110670400	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr9:110666800-110670800	Enhancers	Fetal Muscle Leg	muscle
6	chr9:110667000-110670400	Enhancers	Brain Hippocampus Middle	brain
7	chr9:110667000-110671000	Enhancers	Brain Cingulate Gyrus	brain
8	chr9:110668600-110669800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr9:110668800-110669600	Weak transcription	Brain Angular Gyrus	brain
10	chr9:110668800-110669600	Weak transcription	Brain Anterior Caudate	brain
11	chr9:110668800-110669800	Weak transcription	Adipose Nuclei	Adipose
12	chr9:110668800-110672200	Weak transcription	Psoas Muscle	Psoas
13	chr9:110669000-110669400	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr9:110669000-110669400	Weak transcription	Brain Substantia Nigra	brain
15	chr9:110669000-110670000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links