Variant report

Variant	rs6477596
Chromosome Location	chr9:110499193-110499194
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:110498957..110503711-chr9:110512687..110515100,7	MCF-7	breast:
2	chr9:110250039..110253502-chr9:110497818..110500314,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136826	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10733564	1.00[MEX][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12553971	1.00[AFR][1000 genomes]
rs2417804	1.00[CHB][hapmap];0.85[CHD][hapmap];0.81[GIH][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs4978559	0.95[ASN][1000 genomes]
rs7044046	1.00[CHB][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs7865094	1.00[AFR][1000 genomes]
rs944174	0.84[AMR][1000 genomes]
rs944175	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427850	chr9:110456613-110632324	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv428221	chr9:110456613-110632324	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110494200-110499200	Enhancers	Placenta	Placenta
2	chr9:110495200-110501800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:110495800-110504200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr9:110496000-110499200	Enhancers	Fetal Muscle Leg	muscle
5	chr9:110496000-110500000	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr9:110496000-110500400	Weak transcription	A549	lung
7	chr9:110496000-110500800	Weak transcription	Pancreas	Pancrea
8	chr9:110496000-110503200	Enhancers	Fetal Lung	lung
9	chr9:110496000-110503600	Enhancers	Ovary	ovary
10	chr9:110496000-110510800	Weak transcription	Aorta	Aorta
11	chr9:110496200-110500000	Weak transcription	Brain Hippocampus Middle	brain
12	chr9:110496200-110500000	Weak transcription	Duodenum Mucosa	Duodenum
13	chr9:110496200-110500000	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr9:110496200-110500000	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr9:110496200-110500000	Weak transcription	Stomach Mucosa	stomach
16	chr9:110496200-110500200	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr9:110496200-110500200	Weak transcription	Small Intestine	intestine
18	chr9:110496200-110500200	Enhancers	Hela-S3	cervix
19	chr9:110496200-110500800	Weak transcription	Brain Anterior Caudate	brain
20	chr9:110496200-110502000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr9:110496200-110502400	Weak transcription	Gastric	stomach
22	chr9:110496200-110502400	Enhancers	Osteobl	bone
23	chr9:110496800-110499200	Weak transcription	Spleen	Spleen
24	chr9:110496800-110500000	Weak transcription	NH-A	brain
25	chr9:110496800-110500200	Weak transcription	Colonic Mucosa	Colon
26	chr9:110496800-110501000	Weak transcription	Stomach Smooth Muscle	stomach
27	chr9:110497000-110499200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr9:110497000-110499600	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr9:110497000-110500200	Enhancers	Muscle Satellite Cultured Cells	--
30	chr9:110497000-110500200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr9:110497000-110503000	Enhancers	NHDF-Ad	bronchial
32	chr9:110497000-110503000	Enhancers	NHLF	lung
33	chr9:110497200-110502000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr9:110497200-110502000	Weak transcription	Colon Smooth Muscle	Colon
35	chr9:110497200-110506600	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr9:110497200-110506800	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr9:110497400-110499600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr9:110497400-110499800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr9:110497400-110499800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr9:110497400-110500200	Weak transcription	Right Ventricle	heart
41	chr9:110497400-110500200	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr9:110497400-110500200	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr9:110497400-110500400	Weak transcription	HSMMtube	muscle
44	chr9:110497400-110500600	Weak transcription	Fetal Brain Male	brain
45	chr9:110497400-110500800	Weak transcription	Right Atrium	heart
46	chr9:110497400-110503800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr9:110497400-110510800	Weak transcription	Psoas Muscle	Psoas
48	chr9:110497600-110499800	Weak transcription	Adipose Nuclei	Adipose
49	chr9:110497600-110499800	Weak transcription	NHEK	skin
50	chr9:110497600-110500000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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