Variant report

Variant	rs12554208
Chromosome Location	chr9:139737804-139737805
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:27)
CpG islands
(count:61)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:27 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:139737463-139738020	Hela-S3	cervix:	n/a	n/a
2	CTCF	chr9:139737766-139737840	GM12892	blood:	n/a	n/a
3	POLR2A	chr9:139737479-139738080	Hela-S3	cervix:	n/a	n/a
4	POLR2A	chr9:139737638-139737847	U87	brain:	n/a	n/a
5	CTCF	chr9:139737680-139737830	GM12878	blood:	n/a	chr9:139737725-139737738
6	FOSL2	chr9:139737476-139737956	HepG2	liver:	n/a	n/a
7	POLR2A	chr9:139737471-139738406	HepG2	liver:	n/a	n/a
8	POLR2A	chr9:139729409-139738494	HepG2	liver:	n/a	n/a
9	SIX5	chr9:139737740-139738187	A549	lung:	n/a	n/a
10	CTCF	chr9:139737799-139737805	Spleen_OC	spleen:	n/a	n/a
11	POLR2A	chr9:139734752-139738013	GM12878	blood:	n/a	n/a
12	POLR2A	chr9:139737589-139737939	Hela-S3	cervix:	n/a	n/a
13	POLR2A	chr9:139737553-139738075	HepG2	liver:	n/a	n/a
14	POLR2A	chr9:139731938-139737831	H1-hESC	embryonic stem cell:	n/a	n/a
15	CTCF	chr9:139737754-139737856	GM19240	blood:	n/a	n/a
16	POLR2A	chr9:139737642-139737804	MCF10A-Er-Src	breast:	n/a	n/a
17	POLR2A	chr9:139737471-139738485	K562	blood:	n/a	n/a
18	HEY1	chr9:139737799-139738646	HepG2	liver:	n/a	n/a
19	POLR2A	chr9:139729310-139738538	K562	blood:	n/a	n/a
20	POLR2A	chr9:139737682-139737945	HepG2	liver:	n/a	n/a
21	CTCF	chr9:139737756-139737840	GM12891	blood:	n/a	n/a
22	POLR2A	chr9:139737574-139738450	MCF-7	breast:	n/a	n/a
23	CTCF	chr9:139737720-139737835	GM19239	blood:	n/a	chr9:139737725-139737738
24	POLR2A	chr9:139737473-139737847	HepG2	liver:	n/a	n/a
25	POLR2A	chr9:139737471-139738330	HepG2	liver:	n/a	n/a
26	POLR2A	chr9:139737590-139737968	K562	blood:	n/a	n/a
27	CTCF	chr9:139737740-139737890	GM12866	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:139737793-139737843	Caco-2	colon:	n/a
2	chr9:139737793-139737843	GM12891	blood:	n/a
3	chr9:139737793-139737843	BE2_C	brain:	n/a
4	chr9:139737793-139737843	ECC-1	luminal epithelium:	n/a
5	chr9:139737793-139737843	NHBE	bronchial:	n/a
6	chr9:139737793-139737843	HRPEpiC	eye:	n/a
7	chr9:139737793-139737843	K562	blood:	n/a
8	chr9:139737793-139737843	SK-N-MC	brain:	n/a
9	chr9:139737793-139737843	AG09319	gingival:	n/a
10	chr9:139737793-139737843	NH-A	brain:	n/a
11	chr9:139737793-139737843	NT2-D1	testis:	n/a
12	chr9:139737793-139737843	HEEpiC	esophagus:	n/a
13	chr9:139737793-139737843	U87	brain:	n/a
14	chr9:139737793-139737843	HPAEpiC	pulmonary alveolar:	n/a
15	chr9:139737793-139737843	NB4	blood:	n/a
16	chr9:139737793-139737843	H1-hESC	embryonic stem cell:	embryo
17	chr9:139737793-139737843	HRCEpiC	kidney:	n/a
18	chr9:139737793-139737843	HIPEpiC	eye:	n/a
19	chr9:139737793-139737843	AoSMC	blood vessel:	n/a
20	chr9:139737793-139737843	ovcar-3	ovarian:	n/a
21	chr9:139737793-139737843	Hepatocyte	liver:	n/a
22	chr9:139737793-139737843	AG09309	skin:	n/a
23	chr9:139737793-139737843	SK-N-SH_RA	brain:	n/a
24	chr9:139737793-139737843	ProgFib	skin:	n/a
25	chr9:139737793-139737843	HEK293	kidney:	embryo
26	chr9:139737793-139737843	SK-N-SH	brain:	n/a
27	chr9:139737793-139737843	LNCaP	prostate:	n/a
28	chr9:139737793-139737843	PANC-1	pancreas:	n/a
29	chr9:139737793-139737843	HMEC	breast:	n/a
30	chr9:139737793-139737843	Jurkat	blood:	n/a
31	chr9:139737793-139737843	NHDF-neo	bronchial:	n/a
32	chr9:139737793-139737843	GM12892	blood:	n/a
33	chr9:139737793-139737843	HCT-116	colon:	n/a
34	chr9:139737793-139737843	Hela-S3	cervix:	n/a
35	chr9:139737793-139737843	A549	lung:	n/a
36	chr9:139737793-139737843	SAEC	small airway:	n/a
37	chr9:139737793-139737843	HNPCEpiC	eye:	n/a
38	chr9:139737793-139737843	AG04450	lung:	fetal
39	chr9:139737793-139737843	MCF-7	breast:	n/a
40	chr9:139737793-139737843	HUVEC	blood vessel:	n/a
41	chr9:139737793-139737843	GM06990	blood:	n/a
42	chr9:139737793-139737843	AG10803	skin:	n/a
43	chr9:139737793-139737843	T-47D	breast:	n/a
44	chr9:139737793-139737843	SKMC	muscle:	n/a
45	chr9:139737793-139737843	HAEpiC	amniotic membrane:	n/a
46	chr9:139737793-139737843	BJ	skin:	n/a
47	chr9:139737793-139737843	GM12878	blood:	n/a
48	chr9:139737793-139737843	PrEC	prostate:	n/a
49	chr9:139737793-139737843	HepG2	liver:	n/a
50	chr9:139737793-139737843	IMR90	lung:	fetal

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:139736568..139738310-chr9:139885473..139887903,2	MCF-7	breast:
2	chr9:139734155..139746957-chr9:139834710..139842618,30	MCF-7	breast:
3	chr9:139735812..139738462-chr9:139775721..139777258,2	MCF-7	breast:
4	chr9:139735493..139737881-chr9:139795541..139798423,3	MCF-7	breast:
5	chr9:139736164..139738277-chr9:139795982..139798065,2	MCF-7	breast:
6	chr9:139681221..139684679-chr9:139733731..139738614,5	K562	blood:
7	chr9:139735979..139738283-chr9:139780489..139782463,2	K562	blood:
8	chr9:139679045..139680711-chr9:139735459..139738050,2	MCF-7	breast:
9	chr9:139735444..139738045-chr9:139916095..139917945,2	MCF-7	breast:
10	chr9:139700681..139703866-chr9:139737096..139739272,3	K562	blood:
11	chr9:139734289..139738346-chr9:139834240..139837376,4	MCF-7	breast:
12	chr9:139737023..139739499-chr9:139889680..139891959,2	MCF-7	breast:
13	chr9:139702148..139707988-chr9:139735060..139739597,7	K562	blood:
14	chr9:139682195..139706361-chr9:139728316..139752024,110	MCF-7	breast:
15	chr9:139707448..139710016-chr9:139737047..139739968,2	MCF-7	breast:
16	chr9:139621188..139622806-chr9:139735895..139737890,2	K562	blood:
17	chr9:139692835..139695036-chr9:139735254..139738901,4	MCF-7	breast:

No data

Variant related genes	Relation type
C9orf172	TF binding region
C9orf172	CpG island
ENSG00000213213	Chromatin interaction
ENSG00000196642	Chromatin interaction
ENSG00000159069	Chromatin interaction
ENSG00000169583	Chromatin interaction
ENSG00000272896	Chromatin interaction
ENSG00000272679	Chromatin interaction
ENSG00000273066	Chromatin interaction
ENSG00000228544	Chromatin interaction
ENSG00000244187	Chromatin interaction
ENSG00000233016	Chromatin interaction
ENSG00000213212	Chromatin interaction
ENSG00000127191	Chromatin interaction
ENSG00000176919	Chromatin interaction
ENSG00000266507	Chromatin interaction
ENSG00000148362	Chromatin interaction

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10156573	1.00[CEU][hapmap]
rs1045907	1.00[CEU][hapmap];1.00[CHD][hapmap]
rs11558192	1.00[CHD][hapmap]
rs12346414	1.00[CHD][hapmap]
rs12551220	1.00[CHD][hapmap]
rs17848854	1.00[CHD][hapmap]
rs2292921	1.00[CHD][hapmap]
rs7036668	1.00[CHD][hapmap]
rs7041513	1.00[CEU][hapmap]
rs7851646	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:68 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1849811	chr9:138939662-139755001	Bivalent Enhancer Strong transcription Weak transcription Genic enhancers Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	323 gene(s)	inside rSNPs	diseases
2	esv1822553	chr9:138967205-139755539	Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	323 gene(s)	inside rSNPs	diseases
3	nsv430118	chr9:139101947-139795504	Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	299 gene(s)	inside rSNPs	diseases
4	nsv540342	chr9:139218422-139973312	Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	317 gene(s)	inside rSNPs	diseases
5	esv2758204	chr9:139252829-139826485	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	270 gene(s)	inside rSNPs	diseases
6	esv2759720	chr9:139252829-139826485	Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	270 gene(s)	inside rSNPs	diseases
7	nsv469918	chr9:139254317-140068342	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	341 gene(s)	inside rSNPs	diseases
8	nsv540346	chr9:139360142-140164011	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	471 gene(s)	inside rSNPs	diseases
9	nsv1039149	chr9:139376829-139991102	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	303 gene(s)	inside rSNPs	diseases
10	esv1829857	chr9:139385438-139760041	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
11	esv1819204	chr9:139388365-139758238	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
12	esv1803979	chr9:139395473-139979276	Genic enhancers Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	267 gene(s)	inside rSNPs	diseases
13	esv1831778	chr9:139395473-139979276	Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	267 gene(s)	inside rSNPs	diseases
14	esv1821575	chr9:139395473-140068342	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases
15	esv2422220	chr9:139478587-140244550	Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	454 gene(s)	inside rSNPs	diseases
16	nsv894409	chr9:139483954-139860264	Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	209 gene(s)	inside rSNPs	diseases
17	nsv894422	chr9:139487092-139776400	Transcr. at gene 5' and 3' Enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
18	nsv894432	chr9:139522101-139869914	Flanking Bivalent TSS/Enh Strong transcription Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	205 gene(s)	inside rSNPs	diseases
19	nsv894440	chr9:139544437-139841512	Active TSS Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	194 gene(s)	inside rSNPs	diseases
20	nsv894441	chr9:139544437-139860264	Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	201 gene(s)	inside rSNPs	diseases
21	nsv894442	chr9:139544437-140462099	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	469 gene(s)	inside rSNPs	diseases
22	nsv894450	chr9:139598108-139776400	Active TSS Strong transcription Genic enhancers Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	130 gene(s)	inside rSNPs	diseases
23	nsv894451	chr9:139598108-139995065	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	200 gene(s)	inside rSNPs	diseases
24	nsv894452	chr9:139598108-140523429	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
25	nsv894454	chr9:139607966-139904037	Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	172 gene(s)	inside rSNPs	diseases
26	nsv894455	chr9:139607966-140411547	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	417 gene(s)	inside rSNPs	diseases
27	nsv818738	chr9:139634495-139904037	Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	126 gene(s)	inside rSNPs	diseases
28	nsv894457	chr9:139650448-139776400	Genic enhancers Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	79 gene(s)	inside rSNPs	diseases
29	nsv894458	chr9:139683224-139776400	Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	77 gene(s)	inside rSNPs	diseases
30	nsv894459	chr9:139683224-139787453	Genic enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	80 gene(s)	inside rSNPs	diseases
31	nsv894460	chr9:139683224-139810595	Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	83 gene(s)	inside rSNPs	diseases
32	nsv894461	chr9:139683224-139860264	Strong transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
33	nsv894462	chr9:139683224-140274164	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	353 gene(s)	inside rSNPs	diseases
34	nsv894463	chr9:139683224-140411547	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
35	esv29973	chr9:139690144-139754110	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	70 gene(s)	inside rSNPs	diseases
36	nsv894464	chr9:139690144-139776400	Strong transcription Weak transcription Bivalent/Poised TSS ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases
37	nsv894465	chr9:139690144-139795504	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	76 gene(s)	inside rSNPs	diseases
38	esv1846327	chr9:139690144-139841512	Active TSS Genic enhancers Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	86 gene(s)	inside rSNPs	diseases
39	nsv524322	chr9:139690144-140376668	Genic enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	371 gene(s)	inside rSNPs	diseases
40	nsv894466	chr9:139693992-139784683	Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	74 gene(s)	inside rSNPs	diseases
41	nsv894467	chr9:139693992-139810595	Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	77 gene(s)	inside rSNPs	diseases
42	nsv894468	chr9:139693992-139860264	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	92 gene(s)	inside rSNPs	diseases
43	nsv894469	chr9:139693992-140118448	Bivalent Enhancer Genic enhancers Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	200 gene(s)	inside rSNPs	diseases
44	nsv894470	chr9:139693992-140339091	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	358 gene(s)	inside rSNPs	diseases
45	nsv894471	chr9:139694521-139776400	Weak transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	71 gene(s)	inside rSNPs	diseases
46	nsv894472	chr9:139694521-139787453	Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	74 gene(s)	inside rSNPs	diseases
47	nsv894473	chr9:139694521-139810595	Bivalent/Poised TSS Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	77 gene(s)	inside rSNPs	diseases
48	nsv894474	chr9:139694521-140432318	Genic enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	374 gene(s)	inside rSNPs	diseases
49	nsv894475	chr9:139694569-139786465	Active TSS Genic enhancers Weak transcription Bivalent Enhancer Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	74 gene(s)	inside rSNPs	diseases
50	nsv540352	chr9:139695108-140351178	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	358 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:139734200-139738000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr9:139734400-139738600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:139734600-139738000	Enhancers	K562	blood
4	chr9:139734800-139738400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr9:139735000-139738400	Enhancers	H1 Cell Line	embryonic stem cell
6	chr9:139735200-139738600	Enhancers	Fetal Heart	heart
7	chr9:139735200-139738600	Enhancers	Placenta Amnion	Placenta Amnion
8	chr9:139735200-139738800	Enhancers	Liver	Liver
9	chr9:139735400-139738600	Enhancers	Psoas Muscle	Psoas
10	chr9:139735600-139738000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr9:139735600-139738600	Enhancers	Sigmoid Colon	Sigmoid Colon
12	chr9:139735800-139738800	Enhancers	Fetal Brain Male	brain
13	chr9:139736000-139738800	Flanking Active TSS	Duodenum Mucosa	Duodenum
14	chr9:139736200-139739600	Enhancers	Lung	lung
15	chr9:139736200-139740000	Enhancers	Primary hematopoietic stem cells	blood
16	chr9:139736600-139741000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr9:139736800-139738000	Active TSS	Brain Anterior Caudate	brain
18	chr9:139736800-139738200	Flanking Active TSS	Colonic Mucosa	Colon
19	chr9:139736800-139738200	Active TSS	Pancreatic Islets	Pancreatic Islet
20	chr9:139736800-139738600	Bivalent Enhancer	Stomach Mucosa	stomach
21	chr9:139736800-139741000	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr9:139737200-139738000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr9:139737200-139738000	Active TSS	Brain Cingulate Gyrus	brain
24	chr9:139737200-139738200	Bivalent/Poised TSS	Thymus	Thymus
25	chr9:139737200-139738200	Active TSS	Hela-S3	cervix
26	chr9:139737200-139738400	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr9:139737200-139738400	Enhancers	Esophagus	oesophagus
28	chr9:139737200-139738400	Enhancers	Spleen	Spleen
29	chr9:139737200-139738400	Enhancers	HMEC	breast
30	chr9:139737200-139738600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr9:139737200-139738800	Enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr9:139737200-139738800	Enhancers	Pancreas	Pancrea
33	chr9:139737200-139739000	Active TSS	HepG2	liver
34	chr9:139737200-139739600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr9:139737200-139741200	Weak transcription	Right Atrium	heart
36	chr9:139737400-139738000	Enhancers	Brain Substantia Nigra	brain
37	chr9:139737400-139738000	Weak transcription	Gastric	stomach
38	chr9:139737400-139738000	Enhancers	Rectal Mucosa Donor 31	rectum
39	chr9:139737400-139738000	Enhancers	NH-A	brain
40	chr9:139737400-139738200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr9:139737400-139738200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
42	chr9:139737400-139738200	Enhancers	Rectal Smooth Muscle	rectum
43	chr9:139737400-139738200	Enhancers	NHLF	lung
44	chr9:139737400-139738400	Enhancers	Primary B cells from peripheral blood	blood
45	chr9:139737400-139738400	Enhancers	Right Ventricle	heart
46	chr9:139737400-139738600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr9:139737400-139738600	Enhancers	Adipose Nuclei	Adipose
48	chr9:139737400-139738600	Enhancers	Left Ventricle	heart
49	chr9:139737400-139738600	Enhancers	Ovary	ovary
50	chr9:139737400-139738800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin

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