Variant report

Variant	rs12555749
Chromosome Location	chr1:85194652-85194653
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10116540	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10117202	0.84[EUR][1000 genomes]
rs10120117	0.86[EUR][1000 genomes]
rs10122881	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10124167	0.86[EUR][1000 genomes]
rs10124609	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10738591	0.85[EUR][1000 genomes]
rs10811489	0.87[EUR][1000 genomes]
rs10811497	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10811508	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10811509	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10811514	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10811527	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10811529	0.83[EUR][1000 genomes]
rs10964878	0.83[EUR][1000 genomes]
rs10964918	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10964928	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10964929	0.91[EUR][1000 genomes]
rs10964930	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10964932	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10964933	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10964934	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10964943	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10964952	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10964957	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10964959	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10964961	0.86[EUR][1000 genomes]
rs1112783	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12345537	0.87[EUR][1000 genomes]
rs12551190	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12552812	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12553763	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1330312	0.86[EUR][1000 genomes]
rs1330314	0.83[EUR][1000 genomes]
rs1330317	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1411436	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1590897	0.86[EUR][1000 genomes]
rs1590898	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1928854	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1928855	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1928856	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1952690	0.85[EUR][1000 genomes]
rs2007448	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2225329	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28437205	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3855766	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3955236	0.93[EUR][1000 genomes]
rs4007646	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4112794	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4568686	0.86[EUR][1000 genomes]
rs4582643	0.81[EUR][1000 genomes]
rs4628333	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4977714	0.84[EUR][1000 genomes]
rs4978069	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56035072	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57122438	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57146220	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs618507	0.80[EUR][1000 genomes]
rs6475510	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7022016	0.87[EUR][1000 genomes]
rs7043560	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7046898	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7047240	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7047351	0.92[EUR][1000 genomes]
rs73418252	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs768848	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs768849	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7848803	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7852323	0.85[EUR][1000 genomes]
rs7852809	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7856345	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7857863	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7866359	0.95[EUR][1000 genomes]
rs7866640	0.84[EUR][1000 genomes]
rs980639	0.85[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12555749	KLHL9	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85190600-85199800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr1:85191200-85195400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr1:85191400-85195400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr1:85191800-85195000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:85192000-85195600	Enhancers	Muscle Satellite Cultured Cells	--
6	chr1:85194600-85195400	Enhancers	HUES48 Cell Line	embryonic stem cell

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