Variant report

Variant	rs73418252
Chromosome Location	chr9:21253486-21253487
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:21253305..21254010-chr9:21318409..21318973,2	MCF-7	breast:

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs10116540	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10117202	0.88[EUR][1000 genomes]
rs10120117	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10122881	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10124167	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10124609	0.89[EUR][1000 genomes]
rs10738591	0.88[EUR][1000 genomes]
rs10811489	0.81[EUR][1000 genomes]
rs10811497	0.91[EUR][1000 genomes]
rs10811508	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10811509	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10811514	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10811527	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10811529	0.86[EUR][1000 genomes]
rs10964918	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10964928	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10964929	0.95[EUR][1000 genomes]
rs10964930	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10964932	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10964933	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10964934	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10964943	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10964952	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10964957	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10964959	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10964961	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1112783	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12345537	0.81[EUR][1000 genomes]
rs12551190	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12552812	0.95[EUR][1000 genomes]
rs12553763	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12553910	0.83[EUR][1000 genomes]
rs12555749	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1330312	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1330314	0.86[EUR][1000 genomes]
rs1330316	1.00[ASN][1000 genomes]
rs1330317	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1330318	1.00[ASN][1000 genomes]
rs1330325	0.99[ASN][1000 genomes]
rs1411436	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1590897	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1590898	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1928854	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1928855	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1928856	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1952690	0.88[EUR][1000 genomes]
rs2007448	0.91[EUR][1000 genomes]
rs2225329	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28437205	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2988573	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2988574	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2990140	0.82[EUR][1000 genomes]
rs3855766	0.87[EUR][1000 genomes]
rs3903111	0.99[ASN][1000 genomes]
rs3955236	0.87[EUR][1000 genomes]
rs4007646	0.90[EUR][1000 genomes]
rs4112794	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4568686	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4582643	0.85[EUR][1000 genomes]
rs4628333	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4977714	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4978068	0.99[ASN][1000 genomes]
rs4978069	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56035072	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57122438	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57146220	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57371737	0.83[EUR][1000 genomes]
rs583396	0.83[EUR][1000 genomes]
rs597440	0.80[EUR][1000 genomes]
rs604762	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs612966	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs614541	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs618507	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs637700	0.83[EUR][1000 genomes]
rs6475510	0.90[EUR][1000 genomes]
rs6475527	0.85[AMR][1000 genomes]
rs660675	0.80[EUR][1000 genomes]
rs667214	0.82[EUR][1000 genomes]
rs667635	0.82[EUR][1000 genomes]
rs681680	0.83[EUR][1000 genomes]
rs7022016	0.81[EUR][1000 genomes]
rs7032044	0.81[AMR][1000 genomes]
rs7037707	0.99[ASN][1000 genomes]
rs7043560	0.91[EUR][1000 genomes]
rs7046898	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7047240	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7047351	0.86[EUR][1000 genomes]
rs768848	0.91[EUR][1000 genomes]
rs768849	0.91[EUR][1000 genomes]
rs7848803	0.96[EUR][1000 genomes]
rs7849902	0.81[AMR][1000 genomes]
rs7852809	0.91[EUR][1000 genomes]
rs7856345	0.89[EUR][1000 genomes]
rs7857863	0.95[EUR][1000 genomes]
rs7866359	0.89[EUR][1000 genomes]
rs7866640	0.84[AFR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817218	chr9:20687769-21309177	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv892724	chr9:20690244-21517302	Genic enhancers Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
3	nsv892734	chr9:21108817-21323089	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv1035128	chr9:21196300-21269669	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv982643	chr9:21242163-21262125	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21251000-21254400	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr9:21251800-21253600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr9:21251800-21254200	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr9:21252200-21254000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr9:21252600-21253600	Enhancers	Adipose Nuclei	Adipose
6	chr9:21252600-21253600	Enhancers	Dnd41	blood
7	chr9:21252800-21253600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:21252800-21253600	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr9:21252800-21253600	Enhancers	Primary B cells from cord blood	blood
10	chr9:21252800-21253600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr9:21252800-21253600	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr9:21252800-21253600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr9:21252800-21253600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr9:21252800-21253600	Enhancers	Fetal Lung	lung
15	chr9:21252800-21253600	Enhancers	Fetal Thymus	thymus
16	chr9:21252800-21253600	Enhancers	Thymus	Thymus
17	chr9:21252800-21254400	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr9:21253000-21253600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr9:21253000-21253600	Enhancers	Primary T cells from cord blood	blood
20	chr9:21253000-21253600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr9:21253000-21253600	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr9:21253000-21253600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr9:21253000-21253600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
24	chr9:21253200-21253600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr9:21253200-21253600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr9:21253200-21253600	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr9:21253200-21253600	Enhancers	Primary B cells from peripheral blood	blood
28	chr9:21253200-21253600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
29	chr9:21253200-21253600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
30	chr9:21253200-21253600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
31	chr9:21253200-21253600	Enhancers	Primary T killer memory cells from peripheral blood	blood
32	chr9:21253200-21253600	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
33	chr9:21253200-21253600	Enhancers	Liver	Liver
34	chr9:21253200-21253600	Active TSS	Brain Hippocampus Middle	brain
35	chr9:21253200-21253600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
36	chr9:21253200-21253600	Flanking Bivalent TSS/Enh	Osteobl	bone
37	chr9:21253400-21253600	Enhancers	Primary hematopoietic stem cells	blood
38	chr9:21253400-21253600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr9:21253400-21253600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr9:21253400-21253600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr9:21253400-21253600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr9:21253400-21253600	Flanking Active TSS	Hela-S3	cervix
43	chr9:21253400-21253600	Bivalent Enhancer	HUVEC	blood vessel
44	chr9:21253400-21254200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood

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