Variant report

Variant	rs7849902
Chromosome Location	chr9:21286905-21286906
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10116615	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10116936	1.00[ASN][1000 genomes]
rs10117202	0.86[ASN][1000 genomes]
rs10117677	0.93[EUR][1000 genomes]
rs10120117	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10122881	0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10124167	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10757212	0.93[EUR][1000 genomes]
rs10757213	0.93[EUR][1000 genomes]
rs10811522	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10811523	0.97[EUR][1000 genomes]
rs10811527	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10964943	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10964952	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10964953	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10964954	0.97[EUR][1000 genomes]
rs10964955	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10964956	0.97[EUR][1000 genomes]
rs10964957	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10964958	0.97[EUR][1000 genomes]
rs10964959	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10964960	0.95[EUR][1000 genomes]
rs10964961	0.87[ASN][1000 genomes]
rs10964966	0.93[EUR][1000 genomes]
rs1112783	0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12237982	0.93[EUR][1000 genomes]
rs1224392	0.85[EUR][1000 genomes]
rs12683349	0.93[EUR][1000 genomes]
rs1330311	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1330312	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1330313	0.93[EUR][1000 genomes]
rs1330317	0.81[AMR][1000 genomes]
rs1360286	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1411437	0.83[EUR][1000 genomes]
rs1467734	0.93[EUR][1000 genomes]
rs1467735	0.93[EUR][1000 genomes]
rs1467736	0.93[EUR][1000 genomes]
rs1475547	0.97[EUR][1000 genomes]
rs1475548	0.97[EUR][1000 genomes]
rs1543874	0.97[EUR][1000 genomes]
rs1590897	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1831390	0.83[EUR][1000 genomes]
rs2094787	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2094788	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2480927	0.85[EUR][1000 genomes]
rs2988573	0.83[AMR][1000 genomes]
rs2988574	0.84[AMR][1000 genomes]
rs4406500	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4568686	0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4977714	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4978056	0.83[EUR][1000 genomes]
rs4978092	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4978093	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4978097	0.97[EUR][1000 genomes]
rs600118	0.92[EUR][1000 genomes]
rs604762	0.84[AMR][1000 genomes]
rs612966	0.84[AMR][1000 genomes]
rs614541	0.84[AMR][1000 genomes]
rs616873	0.92[EUR][1000 genomes]
rs618507	0.81[AMR][1000 genomes]
rs6475527	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs667069	0.92[EUR][1000 genomes]
rs67212517	0.97[EUR][1000 genomes]
rs7020867	0.97[EUR][1000 genomes]
rs7021699	0.98[EUR][1000 genomes]
rs7032044	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7035600	0.92[EUR][1000 genomes]
rs7035669	0.93[EUR][1000 genomes]
rs73418252	0.81[AMR][1000 genomes]
rs7853081	0.93[EUR][1000 genomes]
rs7862940	0.93[EUR][1000 genomes]
rs7866640	0.88[ASN][1000 genomes]
rs7872479	0.92[EUR][1000 genomes]
rs8729	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817218	chr9:20687769-21309177	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv892724	chr9:20690244-21517302	Genic enhancers Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
3	nsv892734	chr9:21108817-21323089	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	esv3447912	chr9:21260652-21290903	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2757325	chr9:21281544-21303689	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
6	esv2759679	chr9:21281544-21303689	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
7	esv3693022	chr9:21285389-21306318	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
8	nsv438097	chr9:21285389-21306318	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7849902	KLHL9	Cis_1M	lymphoblastoid	RTeQTL
rs7849902	KLHL9	cis	multi-tissue	Pritchard

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21285000-21287400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:21286600-21287000	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr9:21286600-21289000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr9:21286800-21288000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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