Variant report

Variant	rs1411437
Chromosome Location	chr9:21242249-21242250
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10113879	0.82[ASN][1000 genomes]
rs10114358	0.92[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs10116615	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10117677	0.86[EUR][1000 genomes]
rs10120675	0.82[ASN][1000 genomes]
rs10738591	0.82[ASN][1000 genomes]
rs10757208	0.81[ASN][1000 genomes]
rs10757210	0.82[ASN][1000 genomes]
rs10757212	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10757213	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10811519	0.81[ASN][1000 genomes]
rs10811522	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10811523	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10964929	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10964953	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10964954	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10964955	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10964956	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10964958	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10964960	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10964966	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12237982	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12552812	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12683349	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1330311	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1330313	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1330319	0.91[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1330320	0.92[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1330323	0.81[ASN][1000 genomes]
rs1330324	0.81[ASN][1000 genomes]
rs1360286	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1467734	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1467735	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1467736	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1475547	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1475548	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1543640	0.97[ASN][1000 genomes]
rs1543874	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1831390	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1952690	0.80[ASN][1000 genomes]
rs2094787	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2094788	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4406500	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4978056	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4978092	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4978093	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4978097	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs600118	0.85[EUR][1000 genomes]
rs616873	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6475527	0.91[EUR][1000 genomes]
rs667069	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs67212517	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7020867	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7021699	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7024738	0.86[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs7032044	0.84[EUR][1000 genomes]
rs7035600	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7035669	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7047351	0.85[ASN][1000 genomes]
rs7848803	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7849902	0.83[EUR][1000 genomes]
rs7853081	0.86[EUR][1000 genomes]
rs7857863	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7858766	0.81[ASN][1000 genomes]
rs7862940	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7866359	0.84[ASN][1000 genomes]
rs7872479	0.85[EUR][1000 genomes]
rs7872575	0.81[ASN][1000 genomes]
rs8729	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817218	chr9:20687769-21309177	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv892724	chr9:20690244-21517302	Genic enhancers Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
3	nsv1032466	chr9:21052069-21243756	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv540084	chr9:21052069-21243756	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv892734	chr9:21108817-21323089	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	nsv1035128	chr9:21196300-21269669	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv982643	chr9:21242163-21262125	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1411437	KLHL9	Cis_1M	lymphoblastoid	RTeQTL
rs1411437	KLHL9	cis	multi-tissue	Pritchard

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21236200-21244600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr9:21236400-21244600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr9:21240200-21244600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr9:21240400-21245000	Weak transcription	GM12878-XiMat	blood
5	chr9:21240600-21245000	Weak transcription	Primary neutrophils fromperipheralblood	blood

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