Variant report

Variant	rs7032044
Chromosome Location	chr9:21276891-21276892
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 101 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10116540	1.00[GIH][hapmap];0.90[MEX][hapmap]
rs10116615	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10116936	1.00[ASN][1000 genomes]
rs10117202	0.86[ASN][1000 genomes]
rs10117677	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs10119678	0.82[CEU][hapmap]
rs10120117	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10122881	0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10124167	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10125010	0.94[CEU][hapmap];0.89[TSI][hapmap]
rs10757210	0.88[AFR][1000 genomes]
rs10757212	0.94[EUR][1000 genomes]
rs10757213	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs10811497	1.00[GIH][hapmap];0.90[MEX][hapmap]
rs10811505	0.94[CEU][hapmap]
rs10811522	1.00[CEU][hapmap];0.91[YRI][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10811523	1.00[CEU][hapmap];0.96[TSI][hapmap];0.98[EUR][1000 genomes]
rs10811527	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10964930	1.00[GIH][hapmap];0.95[MEX][hapmap]
rs10964943	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10964952	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10964953	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10964954	0.97[EUR][1000 genomes]
rs10964955	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10964956	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs10964957	0.84[ASW][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10964958	0.98[EUR][1000 genomes]
rs10964959	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10964960	0.96[EUR][1000 genomes]
rs10964961	0.87[ASN][1000 genomes]
rs10964966	0.94[EUR][1000 genomes]
rs1112783	0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12237982	0.94[EUR][1000 genomes]
rs1224392	0.86[EUR][1000 genomes]
rs12683349	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs1330311	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1330312	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1330313	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs1330317	0.81[AMR][1000 genomes]
rs1360286	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1411437	0.84[EUR][1000 genomes]
rs1467734	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs1467735	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs1467736	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs1475547	0.98[EUR][1000 genomes]
rs1475548	0.98[EUR][1000 genomes]
rs1543874	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs1590897	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1820314	0.89[CEU][hapmap]
rs1831390	0.84[EUR][1000 genomes]
rs2015345	1.00[GIH][hapmap];0.95[MEX][hapmap]
rs2094787	0.85[ASW][hapmap];1.00[CEU][hapmap];0.82[LWK][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2094788	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2480927	0.86[EUR][1000 genomes]
rs2939	0.91[GIH][hapmap];0.95[MEX][hapmap]
rs2988573	0.83[AMR][1000 genomes]
rs2988574	0.84[AMR][1000 genomes]
rs2990140	0.81[CHB][hapmap]
rs4406500	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4568686	0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4582643	1.00[GIH][hapmap];0.85[MEX][hapmap]
rs4977682	1.00[GIH][hapmap];0.90[MEX][hapmap]
rs4977714	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4978056	0.84[EUR][1000 genomes]
rs4978092	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4978093	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4978097	0.98[EUR][1000 genomes]
rs596180	0.81[GIH][hapmap]
rs600118	0.92[EUR][1000 genomes]
rs604762	0.81[CHB][hapmap];0.81[GIH][hapmap];0.85[MEX][hapmap];0.84[AMR][1000 genomes]
rs612966	0.81[CHB][hapmap];0.84[AMR][1000 genomes]
rs614541	0.81[CHB][hapmap];0.81[GIH][hapmap];0.85[MEX][hapmap];0.84[AMR][1000 genomes]
rs616873	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs618507	0.81[AMR][1000 genomes]
rs637949	0.81[GIH][hapmap]
rs6475527	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs667069	0.93[EUR][1000 genomes]
rs67212517	0.98[EUR][1000 genomes]
rs7020867	0.98[EUR][1000 genomes]
rs7021699	0.97[EUR][1000 genomes]
rs7033839	1.00[GIH][hapmap];0.90[MEX][hapmap]
rs7035600	0.93[EUR][1000 genomes]
rs7035669	0.94[EUR][1000 genomes]
rs7037147	1.00[GIH][hapmap];0.95[MEX][hapmap]
rs7047811	0.91[GIH][hapmap]
rs73418252	0.81[AMR][1000 genomes]
rs7849862	1.00[GIH][hapmap];0.90[MEX][hapmap]
rs7849902	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7853081	0.94[EUR][1000 genomes]
rs7862940	0.94[EUR][1000 genomes]
rs7866640	0.88[ASN][1000 genomes]
rs7868334	0.94[CEU][hapmap];0.89[TSI][hapmap]
rs7872479	0.93[EUR][1000 genomes]
rs8729	1.00[CEU][hapmap];0.96[TSI][hapmap];0.93[EUR][1000 genomes]
rs9298814	0.94[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817218	chr9:20687769-21309177	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv892724	chr9:20690244-21517302	Genic enhancers Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
3	nsv892734	chr9:21108817-21323089	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	esv2761295	chr9:21258108-21281544	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv3447912	chr9:21260652-21290903	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv430006	chr9:21262516-21280782	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7032044	KLHL9	cis	multi-tissue	Pritchard
rs7032044	KLHL9	Cis_1M	lymphoblastoid	RTeQTL
rs7032044	KLHL9	cis	lymphoblastoid	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21276600-21281200	Weak transcription	Primary neutrophils fromperipheralblood	blood

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